LOCUS BC002699 1654 bp mRNA linear HUM 22-SEP-2005
DEFINITION Homo sapiens ATG5 autophagy related 5 homolog (S. cerevisiae), mRNA
(cDNA clone MGC:3622 IMAGE:3609927), complete cds.
ACCESSION BC002699
VERSION BC002699.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1654)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1654)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC002699.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 12 Row: o Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4757797.
FEATURES Location/Qualifiers
source 1..1654
/db_xref="H-InvDB:HIT000031108"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3622 IMAGE:3609927"
/tissue_type="Uterus, endometrium adenocarcinoma"
/clone_lib="NIH_MGC_44"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1654
/gene="ATG5"
/gene_synonym="APG5"
/gene_synonym="ASP"
/gene_synonym="hAPG5"
/db_xref="GeneID:9474"
/db_xref="MIM:604261"
CDS 200..1027
/gene="ATG5"
/gene_synonym="APG5"
/gene_synonym="ASP"
/gene_synonym="hAPG5"
/codon_start=1
/product="ATG5 protein"
/protein_id="AAH02699.1"
/db_xref="GeneID:9474"
/db_xref="MIM:604261"
/translation="MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSY
LTLVTDKVKKHFQKVMRQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITV
HFKSFPEKDLLHCPSKDAIEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQND
RFDQFWAINRKLMEYPAEENGFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDL
LKEVCPSAIDPEDGEKKNQVMIHGIEPMLETPLQWLSEHLSYPDNFLHISIIPQPTD"
BASE COUNT 520 a 306 c 362 g 466 t
ORIGIN
1 cccgcccggc cgcgatggcg ggtgaaggtg gttcctccgg gcaaggtgga gttggcgaga
61 cgccggcccg gagccctggg gccggttggc gggtgtggcc tgcggggtcc ctcttggggt
121 acatgtctgt tgcttactaa gtttggcttt ggttgaaata agaatttagc ctgtatgtac
181 tgctttaact cctggaagaa tgacagatga caaagatgtg cttcgagatg tgtggtttgg
241 acgaattcca acttgtttca cgctatatca ggatgagata actgaaaggg aagcagaacc
301 atactatttg cttttgccaa gagtaagtta tttgacgttg gtaactgaca aagtgaaaaa
361 gcactttcag aaggttatga gacaagaaga cattagtgag atatggtttg aatatgaagg
421 cacaccactg aaatggcatt atccaattgg tttgctattt gatcttcttg catcaagttc
481 agctcttcct tggaacatca cagtacattt taagagtttt ccagaaaaag accttctgca
541 ctgtccatct aaggatgcaa ttgaagctca ttttatgtca tgtatgaaag aagctgatgc
601 tttaaaacat aaaagtcaag taatcaatga aatgcagaaa aaagatcaca agcaactctg
661 gatgggattg caaaatgaca gatttgacca gttttgggcc atcaatcgga aactcatgga
721 atatcctgca gaagaaaatg gatttcgtta tatccccttt agaatatatc agacaacgac
781 tgaaagacct ttcattcaga agctgtttcg tcctgtggct gcagatggac agttgcacac
841 actaggagat ctcctcaaag aagtttgtcc ttctgctatt gatcctgaag atggggaaaa
901 aaagaatcaa gtgatgattc atggaattga gccaatgttg gaaacacctc tgcagtggct
961 gagtgaacat ctgagctacc cggataattt tcttcatatt agtatcatcc cacagccaac
1021 agattgaagg atcaactatt tgcctgaaca gaatcatcct taaatgggat ttatcagagc
1081 atgtcaccct tttgcttcaa tcaggtttgg tggaggcaac ctgaccagaa acacttcgct
1141 gctgcaagcc agacaggaaa aagattccat gtcagataag gcaactgggc tggtcttact
1201 ttgcatcacc tctgctttcc tccactgcca tcattaaacc tcagctgtga catgaaagac
1261 ttaccggacc actgaaggtc ttctgtaaaa tataatgaag ctgaaacctt tggcctaaga
1321 agaaaatgga agtatgtgcc actcgatttg tatttctgat taacaaataa acaggggtat
1381 ttcctaaggt gaccatggtt gaactttagc tcatgaaagt ggaaacattg gtttaatttt
1441 caagagaatt aagaaagtaa aagagaaatt ctgttatcaa taacttgcaa gtaatttttt
1501 gtaaaagatt gaattacagt aaacccatct ttccttaacg aaaatttcct atgtttacag
1561 tctgtctatt ggtatgcaat cttgtaactt tgataatgaa cagtgagaga tttttaaata
1621 aagcctctaa atatgaaaaa aaaaaaaaaa aaaa
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