LOCUS BC002439 1438 bp mRNA linear HUM 03-NOV-2008
DEFINITION Homo sapiens HIV-1 Tat interactive protein 2, 30kDa, mRNA (cDNA
clone MGC:1318 IMAGE:3346984), complete cds.
ACCESSION BC002439
VERSION BC002439.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1438)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1438)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC002439.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 5 Row: i Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34147574.
FEATURES Location/Qualifiers
source 1..1438
/db_xref="H-InvDB:HIT000030893"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1318 IMAGE:3346984"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1438
/gene="HTATIP2"
/gene_synonym="CC3"
/gene_synonym="TIP30"
/db_xref="GeneID:10553"
/db_xref="HGNC:HGNC:16637"
/db_xref="MIM:605628"
CDS 11..841
/gene="HTATIP2"
/gene_synonym="CC3"
/gene_synonym="TIP30"
/codon_start=1
/product="HIV-1 Tat interactive protein 2, 30kDa"
/protein_id="AAH02439.2"
/db_xref="GeneID:10553"
/db_xref="HGNC:HGNC:16637"
/db_xref="MIM:605628"
/translation="MAGPAALSAAAAAALAAALLLLRREDPGPGAGPSMAETEALSKL
REDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQE
VVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKH
FNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPGEWLV
RKFFGSLPDSWARGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSLKP
"
BASE COUNT 398 a 293 c 370 g 377 t
ORIGIN
1 ggatgctctg atggccgggc ctgcggcgct gagcgcggcg gcggcggctg ctctggcggc
61 cgccctgctc ctgctgcgtc gtgaggaccc ggggccgggg gctggcccca gcatggccga
121 aacagaagcc ctgtcgaagc ttcgggaaga cttcaggatg cagaataaat ccgtctttat
181 tttgggcgcc agcggagaaa ccggcagagt gctcttaaag gaaatcctgg agcagggcct
241 gttttccaaa gtcacgctca ttggccggag gaagctcacc ttcgacgagg aagcttataa
301 aaatgtgaat caagaagtgg tggactttga aaagttggat gactacgcct ctgcctttca
361 aggtcatgat gttggattct gttgcctggg taccaccaga gggaaagctg gggcggaggg
421 atttgttcgt gttgaccgag attatgtgct gaagtctgca gagctggcaa aagctggagg
481 gtgcaaacat ttcaacttgc tatcctctaa aggagctgat aaatcaagca attttttata
541 tctacaagtt aagggagaag tagaagccaa ggttgaagaa ttaaaatttg atcgttactc
601 tgtatttagg cctggagttc tgttatgtga taggcaagaa tctcgcccag gtgaatggct
661 ggttagaaag ttctttggct ccttaccaga ctcttgggcc agggggcatt ctgtgcctgt
721 ggtgaccgtg gttagagcaa tgctgaacaa tgtggtgaga ccaagagaca agcagatgga
781 actgctggag aacaaggcca tccatgacct ggggaaagcg catggctctc tcaagccatg
841 accacactgg agaaatggtt tttattgtca accttaacac ccatcaccaa atcggtaatt
901 tcagggtcta aaaaaagtca gcatgtttta actttgttgt tttactatcc tcaggcatcc
961 attccaatca agaaatgatg gtgctctgca tcagtggttc agagcctggt tatacatata
1021 gatcactcag ggagctttgg aaaaataaag atttgtcagc cctatctcaa acttgaatca
1081 aaatttctgg ggtgtgggca caataatctg taattttctt tgtttatact tcccctgatg
1141 ccactggttc cgatgccact ggctgggggg cctgctttga aatgcttgtc tgcagagtca
1201 cagcagccat gaaaacctta tgaccgtgca aatgagctct gctctaaaat tgttgacatt
1261 catgtctctg agttacaaaa gtgctaattc actacatgta attgtgtaag taaacattgt
1321 gcctttacta cttctttatg taatagaagt tatataccta agcttatata atacatgggg
1381 aggattaaat aaaggaataa agatgaatgg acaactccaa aaaaaaaaaa aaaaaaaa
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