LOCUS BC002401 1508 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens heterogeneous nuclear ribonucleoprotein D (AU-rich
element RNA binding protein 1, 37kDa), mRNA (cDNA clone MGC:8503
IMAGE:2822230), complete cds.
ACCESSION BC002401
VERSION BC002401.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1508)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1508)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 1 Row: h Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 51477710.
FEATURES Location/Qualifiers
source 1..1508
/db_xref="H-InvDB:HIT000030864"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:8503 IMAGE:2822230"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1508
/gene="HNRPD"
/gene_synonym="AUF1A"
/gene_synonym="hnRNPD0"
/gene_synonym="P37"
/db_xref="GeneID:3184"
/db_xref="HGNC:HGNC:5036"
/db_xref="MIM:601324"
CDS 65..1132
/gene="HNRPD"
/gene_synonym="AUF1A"
/gene_synonym="hnRNPD0"
/gene_synonym="P37"
/codon_start=1
/product="heterogeneous nuclear ribonucleoprotein D
(AU-rich element RNA binding protein 1, 37kDa)"
/protein_id="AAH02401.1"
/db_xref="GeneID:3184"
/db_xref="HGNC:HGNC:5036"
/db_xref="MIM:601324"
/translation="MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSG
AGTGGGTASGGTEGGSAESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIG
GLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEH
KLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK
TNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFA
GRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSN
QQSGYGKVSRRGGHQNSYKPY"
BASE COUNT 456 a 270 c 432 g 350 t
ORIGIN
1 gggcacgagg gttcgcggca gcggcgggtg tagtctcggc ggcagcggcg gagacactag
61 cactatgtcg gaggagcagt tcggcgggga cggggcggcg gcagcggcaa cggcggcggt
121 aggcggctcg gcgggcgagc aggagggagc catggtggcg gcgacacagg gggcagcggc
181 ggcggcggga agcggagccg ggaccggggg cggaaccgcg tctggaggca ccgaaggggg
241 cagcgccgag tcggaggggg cgaagattga cgccagtaag aacgaggagg atgaaggcca
301 ttcaaactcc tccccacgac actctgaagc agcgacggca cagcgggaag aatggaaaat
361 gtttatagga ggccttagct gggacactac aaagaaagat ctgaaggact acttttccaa
421 atttggtgaa gttgtagact gcactctgaa gttagatcct atcacagggc gatcaagggg
481 ttttggcttt gtgctattta aagaatcgga gagtgtagat aaggtcatgg atcaaaaaga
541 acataaattg aatgggaagg tgattgatcc taaaagggcc aaagccatga aaacaaaaga
601 gccggttaaa aaaatttttg ttggtggcct ttctccagat acacctgaag agaaaataag
661 ggagtacttt ggtggttttg gtgaggtgga atccatagag ctccccatgg acaacaagac
721 caataagagg cgtgggttct gctttattac ctttaaggaa gaagaaccag tgaagaagat
781 aatggaaaag aaataccaca atgttggtct tagtaaatgt gaaataaaag tagccatgtc
841 gaaggaacaa tatcagcaac agcaacagtg gggatctaga ggaggatttg caggaagagc
901 tcgtggaaga ggtggtggcc ccagtcaaaa ctggaaccag ggatatagta actattggaa
961 tcaaggctat ggcaactatg gatataacag ccaaggttac ggtggttatg gaggatatga
1021 ctacactggt tacaacaact actatggata tggtgattat agcaaccagc agagtggtta
1081 tgggaaggta tccaggcgag gtggtcatca aaatagctac aaaccatact aaattattcc
1141 atttgcaact tatccccaac aggtggtgaa gcagtatttt ccaatttgaa gattcatttg
1201 aaggtggctc ctgccacctg ctaatagcag ttcaaactaa attttttgta tcaagtccct
1261 gaatggaagt atgacgttgg gtccctctga agtttaattc tgagttctca ttaaaagaaa
1321 tttgctttca ttgttttatt tcttaattgc tatgcttcag aatcaatttg tgttttatgc
1381 cctttccccc agtattgtag agcaagtctt gtgttaaaag cccagtgtga cagtgtcatg
1441 atgtagtagt gtcttactgg ttttttaata aatccttttg tataaaaaaa aaaaaaaaaa
1501 aaaaaaaa
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