LOCUS BC002379 3220 bp mRNA linear HUM 17-NOV-2006
DEFINITION Homo sapiens SMAD family member 4, mRNA (cDNA clone MGC:8602
IMAGE:2961238), complete cds.
ACCESSION BC002379
VERSION BC002379.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3220)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3220)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC002379.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 1 Row: l Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34147555.
FEATURES Location/Qualifiers
source 1..3220
/db_xref="H-InvDB:HIT000030845"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:8602 IMAGE:2961238"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3220
/gene="SMAD4"
/gene_synonym="DPC4"
/gene_synonym="JIP"
/db_xref="GeneID:4089"
/db_xref="HGNC:HGNC:6770"
/db_xref="MIM:600993"
CDS 234..1892
/gene="SMAD4"
/gene_synonym="DPC4"
/gene_synonym="JIP"
/codon_start=1
/product="SMAD family member 4"
/protein_id="AAH02379.1"
/db_xref="GeneID:4089"
/db_xref="HGNC:HGNC:6770"
/db_xref="MIM:600993"
/translation="MDNMSITNTPTSNDACLSIVHSLMCHRQGGESETFAKRAIESLV
KKLKEKKDELDSLITAITTNGAHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARLWRWP
DLHKNELKHVKYCQYAFDLKCDSVCVNPYHYERVVSPGIDLSGLTLQSNAPSSMMVKD
EYVHDFEGQPSLSTEGHSIQTIQHPPSNRASTETYSTPALLAPSESNATSTANFPNIP
VASTSQPASILGGSHSEGLLQIASGPQPGQQQNGFTGQPATYHHNSTTTWTGSRTAPY
TPNLPHHQNGHLQHHPPMPPHPGHYWPVHNELAFQPPISNHPAPEYWCSIAYFEMDVQ
VGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERARLHIGKGVQLECK
GEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQ
AATAQAAAAAQAAAVAGNIPGPGSVGGIAPAISLSAAAGIGVDDLRRLCILRMSFVKG
WGPDYPRQSIKETPCWIEIHLHRALQLLDEVLHTMPIADPQPLD"
BASE COUNT 941 a 643 c 672 g 964 t
ORIGIN
1 caacaacacg gccctggtcg tcgtcgccgc tgcggtaacg gagcggtttg ggtggcggag
61 cctgcgttcg cgccttccca ctcccctcgc caccgcccga gcccaggtta tcctgaatac
121 atgtctaaca attttccttg caacgttagc tgttgttttt cactgtttcc aaaggatcaa
181 aattgcttca gaaattggag acatatttga tttaaaagga aaaacttgaa caaatggaca
241 atatgtctat tacgaataca ccaacaagta atgatgcctg tctgagcatt gtgcatagtt
301 tgatgtgcca tagacaaggt ggagagagtg aaacatttgc aaaaagagca attgaaagtt
361 tggtaaagaa gctgaaggag aaaaaagatg aattggattc tttaataaca gctataacta
421 caaatggagc tcatcctagt aaatgtgtta ccatacagag aacattggat gggaggcttc
481 aggtggctgg tcggaaagga tttcctcatg tgatctatgc ccgtctctgg aggtggcctg
541 atcttcacaa aaatgaacta aaacatgtta aatattgtca gtatgcgttt gacttaaaat
601 gtgatagtgt ctgtgtgaat ccatatcact acgaacgagt tgtatcacct ggaattgatc
661 tctcaggatt aacactgcag agtaatgctc catcaagtat gatggtgaag gatgaatatg
721 tgcatgactt tgagggacag ccatcgttgt ccactgaagg acattcaatt caaaccatcc
781 agcatccacc aagtaatcgt gcatcgacag agacatacag caccccagct ctgttagccc
841 catctgagtc taatgctacc agcactgcca actttcccaa cattcctgtg gcttccacaa
901 gtcagcctgc cagtatactg gggggcagcc atagtgaagg actgttgcag atagcatcag
961 ggcctcagcc aggacagcag cagaatggat ttactggtca gccagctact taccatcata
1021 acagcactac cacctggact ggaagtagga ctgcaccata cacacctaat ttgcctcacc
1081 accaaaacgg ccatcttcag caccacccgc ctatgccgcc ccatcccgga cattactggc
1141 ctgttcacaa tgagcttgca ttccagcctc ccatttccaa tcatcctgct cctgagtatt
1201 ggtgttccat tgcttacttt gaaatggatg ttcaggtagg agagacattt aaggttcctt
1261 caagctgccc tattgttact gttgatggat acgtggaccc ttctggagga gatcgctttt
1321 gtttgggtca actctccaat gtccacagga cagaagccat tgagagagca aggttgcaca
1381 taggcaaagg tgtgcagttg gaatgtaaag gtgaaggtga tgtttgggtc aggtgcctta
1441 gtgaccacgc ggtctttgta cagagttact acttagacag agaagctggg cgtgcacctg
1501 gagatgctgt tcataagatc tacccaagtg catatataaa ggtctttgat ttgcgtcagt
1561 gtcatcgaca gatgcagcag caggcggcta ctgcacaagc tgcagcagct gcccaggcag
1621 cagccgtggc aggaaacatc cctggcccag gatcagtagg tggaatagct ccagctatca
1681 gtctgtcagc tgctgctgga attggtgttg atgaccttcg tcgcttatgc atactcagga
1741 tgagttttgt gaaaggctgg ggaccggatt acccaagaca gagcatcaaa gaaacacctt
1801 gctggattga aattcactta caccgggccc tccagctcct agacgaagta cttcatacca
1861 tgccgattgc agacccacaa cctttagact gaggtctttt accgttgggg cccttaacct
1921 tatcaggatg gtggactaca aaatacaatc ctgtttataa tctgaagata tatttcactt
1981 ttgttctgct ttatcttttc ataaagggtt gaaaatgtgt ttgctgcctt gctcctagca
2041 gacagaaact ggattaaaac aatttttttt ttcctcttca gaacttgtca ggcatggctc
2101 agagcttgaa gattaggaga aacacattct tattaattct tcacctgtta tgtatgaagg
2161 aatcattcca gtgctagaaa atttagccct ttaaaacgtc ttagagcctt ttatctgcag
2221 aacatcgata tgtatatcat tctacagaat aatccagtat tgctgatttt aaaggcagag
2281 aagttctcaa agttaattca cctatgttat tttgtgtaca agttgttatt gttgaacata
2341 cttcaaaaat aatgtgccat gtgggtgagt taattttacc aagagtaact ttactctgtg
2401 tttaaaaagt aagttaataa tgtattgtaa tctttcatcc aaaatatttt ttgcaagtta
2461 tattagtgaa gatggtttca attcagattg tcttgcaact tcagttttat ttttgccaag
2521 gcaaaaaact cttaatctgt gtgtatattg agaatccctt aaaattacca gacaaaaaaa
2581 tttaaaatta cgtttgttat tcctagtgga tgactgttga tgaagtatac ttttcccctg
2641 ttaaacagta gttgtattct tctgtatttc taggcacaag gttggttgct aagaagccta
2701 taagaggaat ttcttttcct tcattcatag ggaaaggttt tgtatttttt aaaacactaa
2761 aagcagcgtc actctaccta atgtctcact gttctgcaaa ggtggcaatg cttaaactaa
2821 ataatgaata aactgaatat tttggaaact gctaaattct atgttaaata ctgtgcagaa
2881 taatggaaac attacagttc ataataggta gtttggatat ttttgtactt gatttgatgt
2941 gacttttttt ggtataatgt ttaaatcatg tatgttatga tattgtttaa aattcagttt
3001 ttgtatcttg gggcaagact gcaaactttt ttatatcttt tggttattct aagccctttg
3061 ccatcaatga tcatatcaat tggcagtgac tttgtataga gaatttaagt agaaaagttg
3121 cagatgtatt gactgtacca cagacacaat atgtatgctt tttacctagc tggtagcata
3181 aataaaactg aatctcaaca taaaaaaaaa aaaaaaaaaa
//