LOCUS BC001914 2819 bp mRNA linear HUM 03-NOV-2008
DEFINITION Homo sapiens potassium voltage-gated channel, subfamily H
(eag-related), member 2, mRNA (cDNA clone IMAGE:3510423), partial
cds.
ACCESSION BC001914
VERSION BC001914.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2819)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2819)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-JAN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 8 Row: a Column: 3.
FEATURES Location/Qualifiers
source 1..2819
/db_xref="H-InvDB:HIT000030742"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3510423"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2819
/gene="KCNH2"
/gene_synonym="ERG1"
/gene_synonym="HERG"
/gene_synonym="HERG1"
/gene_synonym="Kv11.1"
/gene_synonym="SQT1"
/db_xref="GeneID:3757"
/db_xref="HGNC:HGNC:6251"
/db_xref="MIM:152427"
CDS <1..2324
/gene="KCNH2"
/gene_synonym="ERG1"
/gene_synonym="HERG"
/gene_synonym="HERG1"
/gene_synonym="Kv11.1"
/gene_synonym="SQT1"
/codon_start=3
/product="KCNH2 protein"
/protein_id="AAH01914.2"
/db_xref="GeneID:3757"
/db_xref="HGNC:HGNC:6251"
/db_xref="MIM:152427"
/translation="VMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEERKVEIAFYRKD
GSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEKDMVVDVDLTPAAPSSESLALDEVTA
MDNHVAGLGPAEERRALVGPGSPPRSAPGQLPSPRAHSLNPDASGSSCSLARTRSRES
CASVRRASSADDIEAMRAGVLPPPPRHASTGAMHPLRSGLLNSTSDSDLVRYRTISKI
PQITLNFVDLKGDPFLASPTSDREIIAPKIKERTHNVTEKVTQVLSLGADVLPEYKLQ
APRIHRWTILHYSPFKAVWDWLILLLVIYTAVFTPYSAAFLLKETEEGPPATECGYAC
QPLAVVDLIVDIMFIVDILINFRTTYVNANEEVVSHPGRIAVHYFKGWFLIDMVAAIP
FDLLIFGSGSEELIGLLKTARLLRLVRVARKLDRYSEYGAAVLFLLMCTFALIAHWLA
CIWYAIGNMEQPHMDSRIGWLHNLGDQIGKPYNSSGLGGPSIKDKYVTALYFTFSSLT
SVGFGNVSPNTNSEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVR
EFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLNRSLLQH
CKPFRGATKGCLRALAMKFKTTHAPPGDTLVHAGDLLTALYFISRGSIEILRGDVVVA
ILGMGWGAGTGLEMPSAASRGASLLNMQSLGLWTWDCLQGHWAPLIHLNSGPPSGAME
RSPTWGEAAELWGSHILLPFRIRHKQTLFASLK"
BASE COUNT 555 a 927 c 773 g 564 t
ORIGIN
1 aggtgatgca gcgaccctgc acctgcgact tcctgcacgg gccgcgcacg cagcgccgcg
61 ctgccgcgca gatcgcgcag gcactgctgg gcgccgagga gcgcaaagtg gaaatcgcct
121 tctaccggaa agatgggagc tgcttcctat gtctggtgga tgtggtgccc gtgaagaacg
181 aggatggggc tgtcatcatg ttcatcctca atttcgaggt ggtgatggag aaggacatgg
241 tggtggacgt ggacctgacg cccgcggcac ccagcagcga gtcgctggcc ctggacgaag
301 tgacagccat ggacaaccac gtggcagggc tcgggcccgc ggaggagcgg cgtgcgctgg
361 tgggtcccgg ctctccgccc cgcagcgcgc ccggccagct cccatcgccc cgggcgcaca
421 gcctcaaccc cgacgcctcg ggctccagct gcagcctggc ccggacgcgc tcccgagaaa
481 gctgcgccag cgtgcgccgc gcctcgtcgg ccgacgacat cgaggccatg cgcgccgggg
541 tgctgccccc gccaccgcgc cacgccagca ccggggccat gcacccactg cgcagcggct
601 tgctcaactc cacctcggac tccgacctcg tgcgctaccg caccattagc aagattcccc
661 aaatcaccct caactttgtg gacctcaagg gcgacccctt cttggcttcg cccaccagtg
721 accgtgagat catagcacct aagataaagg agcgaaccca caatgtcact gagaaggtca
781 cccaggtcct gtccctgggc gccgacgtgc tgcctgagta caagctgcag gcaccgcgca
841 tccaccgctg gaccatcctg cattacagcc ccttcaaggc cgtgtgggac tggctcatcc
901 tgctgctggt catctacacg gctgtcttca caccctactc ggctgccttc ctgctgaagg
961 agacggaaga aggcccgcct gctaccgagt gtggctacgc ctgccagccg ctggctgtgg
1021 tggacctcat cgtggacatc atgttcattg tggacatcct catcaacttc cgcaccacct
1081 acgtcaatgc caacgaggag gtggtcagcc accccggccg catcgccgtc cactacttca
1141 agggctggtt cctcatcgac atggtggccg ccatcccctt cgacctgctc atcttcggct
1201 ctggctctga ggagctgatc gggctgctga agactgcgcg gctgctgcgg ctggtgcgcg
1261 tggcgcggaa gctggatcgc tactcagagt acggcgcggc cgtgctgttc ttgctcatgt
1321 gcacctttgc gctcatcgcg cactggctag cctgcatctg gtacgccatc ggcaacatgg
1381 agcagccaca catggactca cgcatcggct ggctgcacaa cctgggcgac cagataggca
1441 aaccctacaa cagcagcggc ctgggcggcc cctccatcaa ggacaagtat gtgacggcgc
1501 tctacttcac cttcagcagc ctcaccagtg tgggcttcgg caacgtctct cccaacacca
1561 actcagagaa gatcttctcc atctgcgtca tgctcattgg ctccctcatg tatgctagca
1621 tcttcggcaa cgtgtcggcc atcatccagc ggctgtactc gggcacagcc cgctaccaca
1681 cacagatgct gcgggtgcgg gagttcatcc gcttccacca gatccccaat cccctgcgcc
1741 agcgcctcga ggagtacttc cagcacgcct ggtcctacac caacggcatc gacatgaacg
1801 cggtgctgaa gggcttccct gagtgcctgc aggctgacat ctgcctgcac ctgaaccgct
1861 cactgctgca gcactgcaaa cccttccgag gggccaccaa gggctgcctt cgggccctgg
1921 ccatgaagtt caagaccaca catgcaccgc caggggacac actggtgcat gctggggacc
1981 tgctcaccgc cctgtacttc atctcccggg gctccatcga gatcctgcgg ggcgacgtcg
2041 tcgtggccat cctgggtatg gggtgggggg cgggcactgg actggaaatg ccctctgcag
2101 cctcaagagg tgcgagcctt ctgaatatgc agtcactggg gctgtggacc tgggactgcc
2161 tgcagggtca ctgggctcct ttaattcacc taaactcagg ccctccaagc ggggccatgg
2221 agaggagccc cacgtggggt gaggctgctg aactctgggg ttcccacatt ctccttccct
2281 tcaggatccg ccacaaacag acactttttg cttccttaaa gtaggatcaa atctagatcc
2341 tctagcctgg gcagtagagg aagaaatgct agcctggaag ctcggcattt ggtttcacta
2401 agggccatgt ggttccctgc agcctcatgc ctggcccctt gacacatcca aagcaaaggg
2461 agtcctgccc cctcccccca cttcctttct accctgcctg tgcacagtgg gtgggttggt
2521 gtgtctggac actgaggact tcctcccctt ttgcctgtcc ttccctcggc cctgtgtgcc
2581 tcagggcaga tatagcaagc tctttcgacc atagttgatg gtaggacatt ttagactttg
2641 tttctcagct ctgtacaaac acaaatacac acccccacaa aactaaaatc aaagtttcac
2701 tacataacac tgggccttac tgcatgtggt tcattctagc atttctgttc tgtgctgtgc
2761 taagctatac tactgtatgt tctttcagta aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//