LOCUS BC001878 1902 bp mRNA linear HUM 17-NOV-2006
DEFINITION Homo sapiens SMAD family member 1, mRNA (cDNA clone MGC:1376
IMAGE:3546771), complete cds.
ACCESSION BC001878
VERSION BC001878.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1902)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1902)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-JAN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 8 Row: d Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 51173726.
FEATURES Location/Qualifiers
source 1..1902
/db_xref="H-InvDB:HIT000030715"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1376 IMAGE:3546771"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1902
/gene="SMAD1"
/gene_synonym="BSP1"
/gene_synonym="JV4-1"
/gene_synonym="JV41"
/gene_synonym="MADR1"
/db_xref="GeneID:4086"
/db_xref="HGNC:HGNC:6767"
/db_xref="MIM:601595"
CDS 342..1739
/gene="SMAD1"
/gene_synonym="BSP1"
/gene_synonym="JV4-1"
/gene_synonym="JV41"
/gene_synonym="MADR1"
/codon_start=1
/product="SMAD family member 1"
/protein_id="AAH01878.1"
/db_xref="GeneID:4086"
/db_xref="HGNC:HGNC:6767"
/db_xref="MIM:601595"
/translation="MNVTSLFSFTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKK
KGAMEELEKALSCPGQPSNCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHE
LKPLECCEFPFGSKQKEVCINPYHYKRVESPVLPPVLVPRHSEYNPQHSLLAQFRNLG
QNEPHMPLNATFPDSFQQPNSHPFPHSPNSSYPNSPGSSSSTYPHSPTSSDPGSPFQM
PADTPPPAYLPPEDPMTQDGSQPMDTNMMAPPLPSEINRGDVQAVAYEEPKHWCSIVY
YELNNRVGEAFHASSTSVLVDGFTDPSNNKNRFCLGLLSNVNRNSTIENTRRHIGKGV
HLYYVGGEVYAECLSDSSIFVQSRNCNYHHGFHPTTVCKIPSGCSLKIFNNQEFAQLL
AQSVNHGFETVYELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKV
LTQMGSPHNPISSVS"
BASE COUNT 509 a 490 c 448 g 455 t
ORIGIN
1 gaaagcaggc gggcgggcgg agaaaggaga ggccgagcgg ctcaacccgg gccgaggctc
61 ggggagcgga gagtggcgca gcgcccggcc gtccggaccc gggccgcgag accccgctcg
121 cccggccact cgtgctcccg cacggacggg cgcgccgcca acccggtgct gactgggtta
181 cttttttaaa cactaggaat ggtaatttct actcttctgg acttcaaact aagaagttaa
241 agagacttct ctgtaaataa acaaatctct tctgctgtcc ttttgcattt ggagacagct
301 ttatttcacc atatccaagg agtataacta gtgctgtcat tatgaatgtg acaagtttat
361 tttcctttac aagtccagct gtgaagagac ttcttgggtg gaaacagggc gatgaagaag
421 aaaaatgggc agagaaagct gttgatgctt tggtgaaaaa actgaagaaa aagaaaggtg
481 ccatggagga actggaaaag gccttgagct gcccagggca accgagtaac tgtgtcacca
541 ttccccgctc tctggatggc aggctgcaag tctcccaccg gaagggactg cctcatgtca
601 tttactgccg tgtgtggcgc tggcccgatc ttcagagcca ccatgaacta aaaccactgg
661 aatgctgtga gtttcctttt ggttccaagc agaaggaggt ctgcatcaat ccctaccact
721 ataagagagt agaaagccct gtacttcctc ctgtgctggt tccaagacac agcgaatata
781 atcctcagca cagcctctta gctcagttcc gtaacttagg acaaaatgag cctcacatgc
841 cactcaacgc cacttttcca gattctttcc agcaacccaa cagccacccg tttcctcact
901 ctcccaatag cagttaccca aactctcctg ggagcagcag cagcacctac cctcactctc
961 ccaccagctc agacccagga agccctttcc agatgccagc tgatacgccc ccacctgctt
1021 acctgcctcc tgaagacccc atgacccagg atggctctca gccgatggac acaaacatga
1081 tggcgcctcc cctgccctca gaaatcaaca gaggagatgt tcaggcggtt gcttatgagg
1141 aaccaaaaca ctggtgctct attgtctact atgagctcaa caatcgtgtg ggtgaagcgt
1201 tccatgcctc ctccacaagt gtgttggtgg atggtttcac tgatccttcc aacaataaga
1261 accgtttctg ccttgggctg ctctccaatg ttaaccggaa ttccactatt gaaaacacca
1321 ggcggcatat tggaaaagga gttcatcttt attatgttgg aggggaggtg tatgccgaat
1381 gccttagtga cagtagcatc tttgtgcaaa gtcggaactg caactaccat catggatttc
1441 atcctactac tgtttgcaag atccctagtg ggtgtagtct gaaaattttt aacaaccaag
1501 aatttgctca gttattggca cagtctgtga accatggatt tgagacagtc tatgagctta
1561 caaaaatgtg tactatacgt atgagctttg tgaagggctg gggagcagaa taccaccgcc
1621 aggatgttac tagcaccccc tgctggattg agatacatct gcacggcccc ctccagtggc
1681 tggataaagt tcttactcaa atgggttcac ctcataatcc tatttcatct gtatcttaaa
1741 tggccccagg catctgcctc tggaaaacta ttgagccttg catgtacttg aaggatggat
1801 gagtcagaca cgattgagaa ctgacaaagg agccttgata atacttgacc tctgtgacca
1861 actgttggat tcagaaattt aaacaaaaaa aaaaaaaaaa aa
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