LOCUS BC001817 1485 bp mRNA linear HUM 04-NOV-2003
DEFINITION Homo sapiens acyl-Coenzyme A dehydrogenase family, member 9, mRNA
(cDNA clone IMAGE:3530094), partial cds.
ACCESSION BC001817
VERSION BC001817.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1485)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1485)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (29-JAN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 28, 2003 this sequence version replaced BC001817.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 11 Row: k Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21361496.
FEATURES Location/Qualifiers
source 1..1485
/db_xref="H-InvDB:HIT000030669"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3530094"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1485
/gene="ACAD9"
/gene_synonym="ACAD-9"
/gene_synonym="MGC14452"
/gene_synonym="NPD002"
/db_xref="GeneID:28976"
CDS <1..1032
/gene="ACAD9"
/gene_synonym="ACAD-9"
/gene_synonym="MGC14452"
/gene_synonym="NPD002"
/codon_start=1
/product="ACAD9 protein"
/protein_id="AAH01817.2"
/db_xref="GeneID:28976"
/translation="KIPVENILGEVGDGFKVAMNILNSGRFSMGSVVAGLLKRLIEMT
AEYACTRKQFNKRLSEFGLIQEKFALMAQKAYVMESMTYLTAGMLDQPGFPDCSIEAA
MVKVFSSEAAWQCVSEALQILGGLGYTRDYPYERILRDTRILLIFEGTNEILRMYIAL
TGLQHAGRILTTRIHELKQAKVSTVMDTVGRRLRDSLGRTVDLGLTGNHGVVHPSLAD
SANKFEENTYCFGRTVETLLLRFGKTIMEEQLVLKRVANILINLYGMTAVLSRASRSI
RIGLRNHDHEVLLANTFCVEAYLQNLFSLSQLDKYAPENLDEQIKKVSQQILEKRAYI
CAHPLDRTC"
misc_feature 34..477
/gene="ACAD9"
/gene_synonym="ACAD-9"
/gene_synonym="MGC14452"
/gene_synonym="NPD002"
/note="Acyl-CoA_dh; Region: Acyl-CoA dehydrogenase,
C-terminal domain. C-terminal domain of Acyl-CoA
dehydrogenase is an all-alpha, four helical up-and-down
bundle"
/db_xref="CDD:pfam00441"
BASE COUNT 368 a 384 c 417 g 316 t
ORIGIN
1 aagatacctg tggaaaacat ccttggagag gtcggagatg ggtttaaggt ggccatgaac
61 atcctcaaca gcggccggtt cagcatgggc agcgtcgtgg ctgggctgct caagagattg
121 attgaaatga ctgctgagta cgcctgcaca aggaaacagt ttaacaagag gctcagtgaa
181 tttggattga ttcaggagaa atttgcactg atggctcaga aggcttacgt catggagagt
241 atgacctacc tcacagcagg gatgctggac caacctggct ttcccgactg ctccatcgag
301 gcagccatgg tgaaggtgtt cagctccgag gccgcctggc agtgtgtgag tgaggcgctg
361 cagatcctcg ggggcttggg ctacacaagg gactatccgt acgagcgcat actgcgtgac
421 acccgcatcc tcctcatctt cgagggaacc aatgagattc tccggatgta catcgccctg
481 acgggtctgc agcatgccgg ccgcatcctg actaccagga tccatgagct taaacaggcc
541 aaagtgagca cagtcatgga taccgttggc cggaggcttc gggactccct gggccgaact
601 gtggacctgg ggctgacagg caaccatgga gttgtgcacc ccagtcttgc ggacagtgcc
661 aacaagtttg aggagaacac ctactgcttc ggccggaccg tggagacact gctgctccgc
721 tttggcaaga ccatcatgga ggagcagctg gtactgaagc gggtggccaa catcctcatc
781 aacctgtatg gcatgacggc cgtgctgtcg cgggccagcc gctccatccg cattgggctc
841 cgcaaccacg accacgaggt tctcttggcc aacaccttct gcgtggaagc ttacttgcag
901 aatctcttca gcctctctca gctggacaag tatgctccag aaaacctaga tgagcagatt
961 aagaaagtgt cccagcagat ccttgagaag cgagcctata tctgtgccca ccctctggac
1021 aggacatgct gaggcagggg acagtgtccc ctgctaccgc ccgcccctac ccatggcccg
1081 ttgctggatg actgttactc ttttttcaga aggtgttggg attatcacag gttaagcctt
1141 ttgttccccg tctgcacctg aagggttgtc gcctggcctg ggagagcctc ttccaggttt
1201 tgacctgcag gcagtgctct ctaacaggac catcacagct tctgaactga gccggagaga
1261 gagaatggaa ttgctgaccc ctggaactgg cgggtattct ggtcattgag gagacaccat
1321 agtggaaact ggggcttatg ctgctgcctc cagggtgtga ggtgggtggg gacctgtgtc
1381 aggtgtggat agccatttct gctcaaccac acattctcta agaaacagct tgaaagctca
1441 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
//