LOCUS BC001777 1440 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens hippocalcin, mRNA (cDNA clone MGC:1822 IMAGE:3355354),
complete cds.
ACCESSION BC001777
VERSION BC001777.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1440)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1440)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-JAN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 6 Row: p Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 19913445.
FEATURES Location/Qualifiers
source 1..1440
/db_xref="H-InvDB:HIT000030642"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1822 IMAGE:3355354"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1440
/gene="HPCA"
/gene_synonym="BDR2"
/db_xref="GeneID:3208"
/db_xref="HGNC:HGNC:5144"
/db_xref="MIM:142622"
CDS 41..622
/gene="HPCA"
/gene_synonym="BDR2"
/codon_start=1
/product="hippocalcin"
/protein_id="AAH01777.1"
/db_xref="GeneID:3208"
/db_xref="HGNC:HGNC:5144"
/db_xref="MIM:142622"
/translation="MGKQNSKLRPEMLQDLRENTEFSELELQEWYKGFLKDCPTGILN
VDEFKKIYANFFPYGDASKFAEHVFRTFDTNSDGTIDFREFIIALSVTSRGRLEQKLM
WAFSMYDLDGNGYISREEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNN
DGKLSLEEFIRGAKSDPSIVRLLQCDPSSASQF"
BASE COUNT 334 a 444 c 391 g 271 t
ORIGIN
1 ggtgtctccg cgtcgctggg tgggacttgg ctcggcggcc atgggcaagc agaacagcaa
61 gctgcggccc gagatgttgc aggacctgcg agagaacaca gagttctcag agctggagct
121 gcaggagtgg tacaagggct tcctcaagga ctgccccaca ggaatcctca atgtggatga
181 gttcaagaag atctacgcca acttctttcc ctatggtgac gcctccaagt ttgccgagca
241 cgtcttccgc acctttgaca ccaacagcga tggcaccata gactttcggg agttcatcat
301 tgcgctgagc gtgacctcgc gcggccgcct ggagcagaag ctcatgtggg ccttcagcat
361 gtatgacctg gacggcaacg gctacatcag ccgggaggag atgctggaga tcgtgcaggc
421 catttacaag atggtttcgt ccgtgatgaa gatgccggag gacgagtcga ccccggaaaa
481 gaggactgag aaaatcttcc gccaaatgga cacaaacaac gacggcaagc tgtccttgga
541 ggagttcatc cgcggggcca aaagcgaccc gtccatcgtg cgtctgctgc agtgcgaccc
601 cagcagcgcc tcccagttct gagaggagcc aggttcccct tcctccctcc cttcaccggc
661 cccctcccgg ctcttagctt ccactccctt gtgtgtattc tggctggggg ccagattggg
721 gaagcccttc tccccgggtc tgccctgtgg ggggcttccg gaaaagggaa ccctgcggta
781 cccccaggcc aaagcaagta agcggttagc accccccaat cccagaggca acaatagaga
841 cacaggctgg gttggtctgc ccctcagtca ggccccctta cccacccacc agccccaagg
901 cccgacccct cccccaaagg ggcagtcccc ttcttgcagg tctcagcttg cggggtgggg
961 ggagtcatgc ccaggggagg agacttttta tctggagggg agagaaggat tctaggggtg
1021 tggagttgga gaaagaggct tccttgagcc acccttccca ccccagccct tgctggtccc
1081 taggccaagc caccaagtga aaccttccag gatactagcc cgccagctgt gggccccaga
1141 aagccagcct gccttttagc acttggatac acacagaccc acggagctct ctgtgtttgg
1201 cctctcacac acacacaggc ccatagacag atgggcagat gcacccagag ccccatgcac
1261 agtgtcctgc gtgggaaaga gacacggtcc ccctggctga gcccctgtcc tcccctctgt
1321 ccccccaacc gccccccctg catgcagcca aatggagcat ctctgttctt tttaataatt
1381 tcagaataaa gtctcatttc agtgcaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
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