LOCUS BC001769 2041 bp mRNA linear HUM 02-DEC-2006
DEFINITION Homo sapiens TNF receptor-associated factor 4, mRNA (cDNA clone
MGC:1476 IMAGE:3354343), complete cds.
ACCESSION BC001769
VERSION BC001769.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2041)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2041)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-JAN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 6 Row: p Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22027621.
FEATURES Location/Qualifiers
source 1..2041
/db_xref="H-InvDB:HIT000030638"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1476 IMAGE:3354343"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2041
/gene="TRAF4"
/gene_synonym="CART1"
/gene_synonym="MLN62"
/gene_synonym="RNF83"
/db_xref="GeneID:9618"
/db_xref="HGNC:HGNC:12034"
/db_xref="MIM:602464"
CDS 93..1505
/gene="TRAF4"
/gene_synonym="CART1"
/gene_synonym="MLN62"
/gene_synonym="RNF83"
/codon_start=1
/product="TNF receptor-associated factor 4"
/protein_id="AAH01769.1"
/db_xref="GeneID:9618"
/db_xref="HGNC:HGNC:12034"
/db_xref="MIM:602464"
/translation="MPGFDYKFLEKPKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQ
EFLSEGVFKCPEDQLPLDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGH
LNTCSFNVIPCPNRCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGMC
PQESVYCENKCGARMMRRLLAQHATSECPKRTQPCTYCTKEFVFDTIQSHQYQCPRLP
VACPNQCGVGTVAREDLPGHLKDSCNTALVLCPFKDSGCKHRCPKLAMARHVEESVKP
HLAMMCALVSRQRQELQELRRELEELSVGSDGVLIWKIGSYGRRLQEAKAKPNLECFS
PAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLYIRVLPGAFDNLLEWPFARRVTFSLLD
QSDPGLAKPQHVTETFHPDPNWKNFQKPGTWRGSLDESSLGFGYPKFISHQDIRKRNY
VRDDAVFIRAAVELPRKILS"
BASE COUNT 423 a 595 c 596 g 427 t
ORIGIN
1 gcccggagcc gggagcgccg ctccagcgag gcgcgggctg tggggccgcc gcgtgcctgg
61 ccccgctcgc ccgtgccggc cgctcgcccg ccatgcctgg cttcgactac aagttcctgg
121 agaagcccaa gcgacggctg ctgtgcccac tgtgcgggaa gcccatgcgc gagcctgtgc
181 aggtttccac ctgcggccac cgtttctgcg atacctgcct gcaggagttc ctcagtgaag
241 gagtcttcaa gtgccctgag gaccagcttc ctctggacta tgccaagatc tacccagacc
301 cggagctgga agtacaagta ttgggcctgc ctatccgctg catccacagt gaggagggct
361 gccgctggag tgggccacta cgtcatctac agggccacct gaatacctgc agcttcaatg
421 tcattccctg ccctaatcgc tgccccatga agctgagccg ccgtgatcta cctgcacact
481 tgcagcatga ctgccccaag cggcgcctca agtgcgagtt ttgtggctgt gacttcagtg
541 gggaggccta tgagagccat gagggtatgt gcccccagga gagtgtctac tgtgagaata
601 agtgtggtgc ccgcatgatg cggcggctgc tggcccagca tgccacctct gagtgcccca
661 agcgcactca gccctgcacc tactgcacta aggagttcgt ctttgacacc atccagagcc
721 accagtacca gtgcccaagg ctgcctgttg cctgccccaa ccaatgtggt gtgggcactg
781 tggctcggga ggacctgcca ggccatctga aggacagctg taacaccgcc ctggtgctct
841 gcccattcaa agactccggc tgcaagcaca ggtgccctaa gctggcaatg gcacggcatg
901 tggaggagag tgtgaagcca catctggcca tgatgtgtgc cctggtgagc cggcaacggc
961 aggagctgca ggagcttcgg cgagagctgg aggagctatc agtgggcagt gatggcgtgc
1021 tcatctggaa gattggcagc tatggacggc ggctacagga ggccaaggcc aagcccaacc
1081 ttgagtgctt cagcccagcc ttctacacac ataagtatgg ttacaagctg caggtgtctg
1141 cattcctcaa tggcaatggc agtggtgagg gcacacacct ctcactgtac attcgtgtgc
1201 tgcctggtgc ctttgacaat ctccttgagt ggccctttgc ccgccgtgtc accttctccc
1261 tgctggatca gagcgaccct gggctggcta aaccacagca cgtcactgag accttccacc
1321 ccgacccaaa ctggaagaat ttccagaagc caggcacgtg gcggggctcc ctggatgaga
1381 gttctctggg ctttggttat cccaagttca tctcccacca ggacattcga aagcgaaact
1441 atgtgcggga tgatgcagtc ttcatccgtg ctgctgttga actgccccgg aagatcctca
1501 gctgagtgca ggtggggttc gaggggaaag gacgatgggg catgacctca gtcaggcact
1561 ggctgaactt ggagaggggg ccggaccccc gtcagctgct tctgctgcct aggttctgtt
1621 accccatcct ccctccccca gccaccaccc tcaggtgcct ccaattggtg cttcagccct
1681 ggcccctgtg gggaacaggt cttggggtca tgaagggctg gaaacaagtg accccagggc
1741 ctgtctccct tcttgggtag ggcagacatg ccttggtgcc ggtcacactc tacacggact
1801 gaggtgcctg ctcaggtgct atgtcccaag agccataagg gggtgggaat tggggaggga
1861 gaaagggtag ttcaaagagt ctgtcttgag atctgatttt ttcccccttt acctagctgt
1921 gccccctctg gttatttatt tccttagtgc caggagggca cagcagggga gccctgattt
1981 ttaataaatc cggaattgta tttattaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2041 a
//