LOCUS BC001757 2020 bp mRNA linear HUM 19-JUN-2006
DEFINITION Homo sapiens claudin domain containing 1, mRNA (cDNA clone MGC:3316
IMAGE:3509929), complete cds.
ACCESSION BC001757
VERSION BC001757.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2020)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2020)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-JAN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC001757.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 7 Row: f Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 11096339.
FEATURES Location/Qualifiers
source 1..2020
/db_xref="H-InvDB:HIT000050402"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3316 IMAGE:3509929"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2020
/gene="CLDND1"
/gene_synonym="GENX-3745"
/gene_synonym="MGC111162"
/gene_synonym="MGC3316"
/gene_synonym="MGC9861"
/db_xref="GeneID:56650"
/db_xref="HGNC:HGNC:1322"
CDS 95..856
/gene="CLDND1"
/gene_synonym="GENX-3745"
/gene_synonym="MGC111162"
/gene_synonym="MGC3316"
/gene_synonym="MGC9861"
/codon_start=1
/product="claudin domain containing 1"
/protein_id="AAH01757.2"
/db_xref="GeneID:56650"
/db_xref="HGNC:HGNC:1322"
/translation="MDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYRSPVQENSS
DLNKSIWDEFISDEADEKTYNDALFRYNGTVGLWRRCITIPKNMHWYSPPERTESFDV
VTKCVSFTLTEQFMEKFVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLC
ACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFCL
ACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA"
BASE COUNT 587 a 392 c 366 g 675 t
ORIGIN
1 agctggcgga gcaggaggat gggcgtatgc aggtgataga ctagagaaca agacctctgt
61 ctccgtagca tcctggagca gtctgaatgc cagaatggat aaccgttttg ctacagcatt
121 tgtaattgct tgtgtgctta gcctcatttc caccatctac atggcagcct ccattggcac
181 agacttctgg tatgaatatc gaagtccagt tcaagaaaat tccagtgatt tgaataaaag
241 catctgggat gaattcatta gtgatgaggc agatgaaaag acttataatg atgcactttt
301 tcgatacaat ggcacagtgg gattgtggag acggtgtatc accataccca aaaacatgca
361 ttggtatagc ccaccagaaa ggacagagtc atttgatgtg gtcacaaaat gtgtgagttt
421 cacactaact gagcagttca tggagaaatt tgttgatccc ggaaaccaca atagcgggat
481 tgatctcctt aggacctatc tttggcgttg ccagttcctt ttaccttttg tgagtttagg
541 tttgatgtgc tttggggctt tgatcggact ttgtgcttgc atttgccgaa gcttatatcc
601 caccattgcc acgggcattc tccatctcct tgcaggtctg tgtacactgg gctcagtaag
661 ttgttatgtt gctggaattg aactactcca ccagaaacta gagctccctg acaatgtatc
721 cggtgaattt ggatggtcct tctgcctggc ttgtgtctct gctcccttac agttcatggc
781 ttctgctctc ttcatctggg ctgctcacac caaccggaaa gagtacacct taatgaaggc
841 atatcgtgtg gcatgagcaa gaaactgcct gctttacaat tgccattttt atttttttaa
901 aataatactg atattttccc cacctctcaa ttgtttttaa tttttatttg tggatatacc
961 attttattat gaaaatctat tttatttata cacattcacc actaaataca cacttaatac
1021 cactaaaatt tatgtggttt actttaagcg atgccatctt tcaaataaac taatctaggt
1081 ctagacagaa agaaatggat agagacttga cacaaattta tgaaagaaaa ttgggagtag
1141 gaatgtgacc gaaaacaagt tgtgctaatg tctgttagac ttttcagtaa aactaaagta
1201 actgtatctg ttcaactaaa aactctatat tagtttcttt gggaaacctc tcatcgtcaa
1261 aactttgttc actttgctgt tgtagatagc cagtcaacca gcagtattag tgctgttttc
1321 aaagatttaa gctctataaa attgggaaat tatctaagat cattttccct aagcattgac
1381 acatagcttc atctgaggtg agatatggca gctgtttgta tctgcactgt gtctgtctac
1441 aaaaagtgaa aaatacagtg tttacttgaa attttaactt tgtaactgca agaattccag
1501 ttcagccggg cgaggattag tattattttt aactctccgt aagattttca gtaccaccaa
1561 attgttttgg attttttttc tttcctcttc acataccagg gttattaaaa gtgtgctttc
1621 tttttacatt atattacagt tacaaggtaa aattcctcaa ctgctattta tttattccag
1681 cccagtacta taaagaacgt ttcaccataa tgaccctcca gagctgggaa acctaccaca
1741 agatctaaag ttctggctgt ccattaacct ccaactatgg tctttatttc ttgtggtaat
1801 atgatgtgcc tttccttgcc taaatccctt cctggtgtgt atcaacatta tttaatgtct
1861 tctaattcag tcattttttt ataagtatgt ctataaacat tgaactttaa aaaacttatt
1921 tatttattcc actactgtag caattgacag attaaaaaaa tgtaacttca taatttctta
1981 ccataacctc aatgtctttt ttaaaaaaaa aaaaaaaaaa
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