LOCUS BC001665 2793 bp mRNA linear HUM 03-FEB-2004
DEFINITION Homo sapiens actin binding LIM protein family, member 3, mRNA (cDNA
clone MGC:1835 IMAGE:2988043), complete cds.
ACCESSION BC001665
VERSION BC001665.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2793)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2793)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (16-JAN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC001665.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 3 Row: j Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7662329.
FEATURES Location/Qualifiers
source 1..2793
/db_xref="H-InvDB:HIT000030559"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1835 IMAGE:2988043"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_15"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2793
/gene="ABLIM3"
/gene_synonym="KIAA0843"
/db_xref="GeneID:22885"
CDS 276..1910
/gene="ABLIM3"
/gene_synonym="KIAA0843"
/codon_start=1
/product="ABLIM3 protein"
/protein_id="AAH01665.1"
/db_xref="GeneID:22885"
/translation="MNTSIPYQQNPYNPRGSSNVIQCYRCGDTCKGEVVRVHNNHFHI
RCFTCQVCGCGLAQSGFFFKNQEYICTQDYQQLYGTRCDSCRDFITGEVISALGRTYH
PKCFVCSLCRKPFPIGDKVTFSGKECVCQTCSQSMASSKPIKIRGPSHCAGCKEEIKH
GQSLLALDKQWHVSCFKCQTCSVILTGEYISKDGVPYCESDYHAQFGIKCETCDRYIS
GRVLEAGGKHYHPTCARCVRCHQMFTEGEEMYLTGSEVWHPICKQAARAEKKLKHRRT
SETSISPPGSSIGSPNRVICDIYENLDLRQRRASSPGYIDSPTYSRQGMSPTFSRSPH
HYYRSGDLSTATKSKTSEDISQTSKYSPIYSPDPYYASESEYWTYHGSPKVPRARRFS
SGGEEDDFDRSMHKLQSGIGRLILKEEMKARSSSYADPWTPPRSSTSSREALHTAGYE
MSLNGSPRSHYLADSDPLISKSASLPAYRRNGLHRTPSADLFHYDSMNAVNWGMREYK
IYPYELLLVTTRGRNRLPKDVDRTRLEGNFWKSGCL"
misc_feature 342..512
/gene="ABLIM3"
/gene_synonym="KIAA0843"
/note="LIM; Region: LIM domain. This family represents two
copies of the LIM structural domain"
/db_xref="CDD:pfam00412"
misc_feature 516..674
/gene="ABLIM3"
/gene_synonym="KIAA0843"
/note="LIM; Region: Zinc-binding domain present in Lin-11,
Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains
bind protein partners via tyrosine-containing motifs. LIM
domains are found in many key regulators of developmental
pathways"
/db_xref="CDD:smart00132"
misc_feature 726..896
/gene="ABLIM3"
/gene_synonym="KIAA0843"
/note="LIM; Region: LIM domain. This family represents two
copies of the LIM structural domain"
/db_xref="CDD:pfam00412"
BASE COUNT 724 a 752 c 731 g 586 t
ORIGIN
1 caatctgagg agcaggagga ccggggcgcc ggtgtcctgc cgcctccttc tccttgctct
61 cacctgcgcc tattagtcca cgcgccttca aggccagggg ctacagccca gacagagagg
121 ggacagcaga gggagagaga gcacctgagg atacagagct ggcactggac tgccttttca
181 ccccccaggt gatgagtgag gttcgaagaa cggaagattt aaaaagcagc cggggcctcc
241 gtattgaatg aaagacccag tgcaaagaca tcaccatgaa cactagcatt ccttatcagc
301 agaatcctta caatccacgg ggcagctcca atgtcatcca gtgctaccgc tgtggagaca
361 cctgcaaagg ggaagtggtc cgcgtgcaca acaaccactt ccacatcaga tgcttcacct
421 gtcaagtatg tggctgtggc ctggcccagt caggcttctt cttcaagaac caggagtaca
481 tctgcaccca ggactaccag caactctatg gcacccgctg tgacagctgc cgggacttca
541 tcacaggcga agtcatctcg gccctgggcc gcacttacca ccccaagtgc ttcgtgtgca
601 gcttgtgcag gaagcctttc cccattggag acaaggtgac cttcagcggt aaagaatgtg
661 tgtgccaaac gtgctcccag tccatggcca gcagtaagcc catcaagatt cgtggaccaa
721 gccactgtgc cgggtgcaag gaggagatca agcacggcca gtcactcctg gctctggaca
781 agcagtggca cgtcagctgc ttcaagtgcc agacctgcag cgtcatcctc accggggagt
841 atatcagcaa ggatggtgtt ccatactgtg agtccgacta ccatgcccag tttggcatta
901 aatgtgagac ttgtgaccga tacatcagtg gcagagtctt ggaggcagga gggaagcact
961 accacccaac ctgtgccagg tgtgtacgct gccaccagat gttcaccgaa ggagaggaaa
1021 tgtacctcac aggttccgag gtttggcacc ccatctgcaa acaggcagcc cgggcagaga
1081 agaagttaaa gcatagacgg acatctgaaa cctccatctc accccctgga tccagcattg
1141 ggtcacccaa ccgagtcatc tgcgacatct acgagaacct ggacctccgg cagagacggg
1201 cctccagccc ggggtacata gactccccca cctacagccg gcagggcatg tcccccacct
1261 tctcccgctc acctcaccac tactaccgct ctggtgattt gtctacagca accaagagca
1321 aaacaagtga agacatcagc cagacctcca agtacagtcc catctactcg ccagacccct
1381 actatgcttc ggagtctgag tactggacct accatgggtc ccccaaagtg ccccgagcca
1441 gaaggttctc gtctggagga gaggaggatg attttgaccg cagcatgcac aagctccaaa
1501 gtggaattgg ccggctgatt ctgaaggaag aaatgaaggc ccggtcgagc tcctatgcag
1561 atccctggac ccctccccgg agctccacca gcagccggga agccctgcac acagctggct
1621 atgagatgtc cctcaatggc tcccctcggt cgcactacct ggctgacagt gatcctctca
1681 tctccaaatc tgcctccctg cctgcctacc gaagaaatgg gctgcacagg acacccagcg
1741 cagacctctt ccactacgac agcatgaacg cagtcaactg gggcatgcga gagtacaaga
1801 tctaccctta tgaactgctg ctggtgacta caagaggaag aaaccgactg cccaaggatg
1861 tagacaggac ccgtttagag ggaaactttt ggaagagtgg ctgcttatga gattccaaaa
1921 tgaagtgttg gccaacaccg ctcatggcca tcctggattt tcccagtggc ttcccttcct
1981 gctcgcctcc ctgaacaggg gagaaagctt aacctctctt ctcctctcca aacctttcac
2041 cttgaatggg taatgtttgg tgggggctgt tccttcttgg agaagccttg agtcggacca
2101 ttttgagatc atggaggaag gatgaagaag tgaaaatgac aataatgact ctcaagaggc
2161 tggcgatgtg acatggcaaa tgtagaactg acttaaattg aacaaaccct cactgagcac
2221 ctctgatgtt gagcacctgc tgaatactga gcactgaatg ggggaggggg aggggagcac
2281 ggggtgagtc aacctgggac tcggtctcag ggatatgcct accaatagcg ggtatcgtaa
2341 ggcatgtacc caaacataac ggatgtaagg cagaaagtga tcggagaagg aatgagaaag
2401 tgtgcgtgat gttaatgaaa agtcatatgc agctagagca gacccaggaa agctttctgg
2461 aagagattgc atctgaggaa attcaggaag gatctttgta gattgggggg agattctaaa
2521 ttgaaggggt gatggggtga ggggccagag ggaagtctgc tgtgttctca tgtaggatgt
2581 cagccctccc tgcaacttct ctttttggcc aatgtctttt cactttcctg accctttaga
2641 atcatcccca gccagacgca atcatggaag ttgccttatt gtcactggtt aagaacttgg
2701 cgagattgaa gggcttttgt tattgttgtt ggatattttt gtttcccata aaagcacatc
2761 atttcaaccc taaaaaaaaa aaaaaaaaaa aaa
//