LOCUS BC001392 544 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ribosomal protein S27a, mRNA (cDNA clone MGC:1629
IMAGE:3050927), complete cds.
ACCESSION BC001392
VERSION BC001392.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 544)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 544)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC001392.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 4 Row: m Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 27436941.
FEATURES Location/Qualifiers
source 1..544
/db_xref="H-InvDB:HIT000030375"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1629 IMAGE:3050927"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..544
/gene="RPS27A"
/gene_synonym="CEP80"
/gene_synonym="HUBCEP80"
/gene_synonym="UBA80"
/gene_synonym="UBCEP1"
/db_xref="GeneID:6233"
/db_xref="HGNC:HGNC:10417"
/db_xref="MIM:191343"
CDS 28..498
/gene="RPS27A"
/gene_synonym="CEP80"
/gene_synonym="HUBCEP80"
/gene_synonym="UBA80"
/gene_synonym="UBCEP1"
/codon_start=1
/product="ribosomal protein S27a"
/protein_id="AAH01392.1"
/db_xref="GeneID:6233"
/db_xref="HGNC:HGNC:10417"
/db_xref="MIM:191343"
/translation="MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAV
LKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK"
BASE COUNT 184 a 100 c 131 g 129 t
ORIGIN
1 gccatctgcg gtggagccgc caccaaaatg cagattttcg tgaaaaccct tacggggaag
61 accatcaccc tcgaggttga accctcggat acgatagaaa atgtaaaggc caagatccag
121 gataaggaag gaattcctcc tgatcagcag agactgatct ttgctggcaa gcagctggaa
181 gatggacgta ctttgtctga ctacaatatt caaaaggagt ctactcttca tcttgtgttg
241 agacttcgtg gtggtgctaa gaaaaggaag aagaagtctt acaccactcc caagaagaat
301 aagcacaaga gaaagaaggt taagctggct gtcctgaaat attataaggt ggatgagaat
361 ggcaaaatta gtcgccttcg tcgagagtgc ccttctgatg aatgtggtgc tggggtgttt
421 atggcaagtc actttgacag acattattgt ggcaaatgtt gtctgactta ctgtttcaac
481 aaaccagaag acaagtaact gtatgagtta ataaaagaca tgaactaaaa aaaaaaaaaa
541 aaaa
//