LOCUS BC001294 1275 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens chromosome 17 open reading frame 48, mRNA (cDNA clone
MGC:5294 IMAGE:3452502), complete cds.
ACCESSION BC001294
VERSION BC001294.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1275)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1275)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC001294.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 4 Row: g Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 37059747
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..1275
/db_xref="H-InvDB:HIT000030299"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:5294 IMAGE:3452502"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1275
/gene="C17orf48"
/gene_synonym="MDS006"
/gene_synonym="NBLA03831"
/db_xref="GeneID:56985"
/db_xref="HGNC:HGNC:30925"
CDS 31..648
/gene="C17orf48"
/gene_synonym="MDS006"
/gene_synonym="NBLA03831"
/codon_start=1
/product="C17orf48 protein"
/protein_id="AAH01294.1"
/db_xref="GeneID:56985"
/db_xref="HGNC:HGNC:30925"
/translation="MDDKPNPEALSDSSERLFSFGVIADVQFADLEDGFNFQGTRRRY
YRHSLLHLQGAIEDWNNESSMPCCVLQLGDIIDGYNAQYNASKKSLELVMDMFKRLKV
PVHHTWGNHEFYNFSREYLTHSKLNTKFLEDQIVHHPETMPSEDYYAYHFVPFPKFRF
ILLDAYDLSVLGVDQSSPKYEQCMKILREHNPNTELNSPQGELFL"
BASE COUNT 409 a 248 c 260 g 358 t
ORIGIN
1 gggccggcgc acgaaacctg tttggaggtt atggatgata aacccaatcc tgaagcccta
61 agtgacagtt cagagcgtct tttctccttt ggcgtcatcg cagatgttca atttgcagac
121 ttagaagatg gctttaattt ccaaggaacc aggcggcgat actacagaca tagtcttctt
181 cacttacagg gtgccattga agactggaat aatgaaagca gcatgccctg ttgtgtcctt
241 cagcttggag atatcatcga tggatataat gcacagtata atgcatccaa aaagtcccta
301 gaacttgtta tggacatgtt caagaggctt aaagttccag ttcatcatac atggggaaac
361 catgaattct ataacttcag tagagagtat ttaacacact ctaaacttaa cactaagttt
421 ctagaagatc agattgtaca tcatcctgag accatgcctt cagaagatta ttatgcttat
481 cattttgtac cattccctaa attccggttc attttacttg atgcatatga cttgagtgtc
541 ttgggcgtgg atcagtcttc tccaaaatac gagcagtgta tgaagatatt gagggagcac
601 aatccaaata cggaactgaa tagtcctcaa ggtgaattat tcctttgagc tgagaatcta
661 atagattgtc tttaaattct tcagctacct tttattcagc aggaagatgg acaattaagg
721 actttctgag ccccagtttg tccagtttaa tggaggattc agccaagaac agctaaactg
781 gttgaatgaa gtgctaacat tctctgacac aaaccaagaa aaggtggtga ttgccatctt
841 cccatttacc cggacgcctc tgacaatgtg tgcctggcct ggaactacag agatgccctg
901 gcagtcattt ggtctcatga gtgtgtggtg tgtttctttg ctggtcacac ccatgatggt
961 ggctactctg aggatccttt tggtgtatac cacgtcaacc tagaaggagt tattgaaaca
1021 gctccagaca gccaagcctt tggcacagtt catgtctatc ctgacaaaat gatgttgaaa
1081 gggagaggca gagttccaga tagaattatg aattacaaga aaggaagagc cttccattgt
1141 tagtctaatt tattttaact tgatagaaaa tgagctttgt gtttgtccct cctaaacaaa
1201 aaaataaaaa tcctctgtct catcaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1261 aaaaaaaaaa aaaaa
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