LOCUS BC001293 1989 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens homeobox C10, mRNA (cDNA clone MGC:5259
IMAGE:3458115), complete cds.
ACCESSION BC001293
VERSION BC001293.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1989)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1989)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 4 Row: e Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24497532.
FEATURES Location/Qualifiers
source 1..1989
/db_xref="H-InvDB:HIT000030298"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:5259 IMAGE:3458115"
/tissue_type="Cervix, carcinoma"
/clone_lib="NIH_MGC_12"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1989
/gene="HOXC10"
/gene_synonym="MGC5259"
/db_xref="GeneID:3226"
/db_xref="HGNC:HGNC:5122"
/db_xref="MIM:605560"
CDS 72..1100
/gene="HOXC10"
/gene_synonym="MGC5259"
/codon_start=1
/product="homeobox C10"
/protein_id="AAH01293.1"
/db_xref="GeneID:3226"
/db_xref="HGNC:HGNC:5122"
/db_xref="MIM:605560"
/translation="MTCPRNVTPNSYAEPLAAPGGGERYSRSAGMYMQSGSDFNCGVM
RGCGLAPSLSKRDEGSSPSLALNTYPSYLSQLDSWGDPKAAYRLEQPVGRPLSSCSYP
PSVKEENVCCMYSAEKRAKSGPEAALYSHPLPESCLGEHEVPVPSYYRASPSYSALDK
TPHCSGANDFEAPFEQRASLNPRAEHLESPQLGGKVSFPETPKSDSQTPSPNEIKTEQ
SLAGPKGSPSESEKERAKAADSSPDTSDNEAKEEIKAENTTGNWLTAKSGRKKRCPYT
KHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNRENRIRE
LTSNFNFT"
BASE COUNT 557 a 553 c 467 g 412 t
ORIGIN
1 cggatgggga aaaaaaaaga tgtcagctcc tccgctgtag tattgctcct taaaaacccc
61 tctctctgaa aatgacatgc cctcgcaatg taactccgaa ctcgtacgcg gagcccttgg
121 ctgcgcccgg cggaggagag cgctatagcc ggagcgcagg catgtatatg cagtctggga
181 gtgacttcaa ttgcggggtg atgaggggct gcgggctcgc gccctcgctc tccaagaggg
241 acgagggcag cagccccagc ctcgccctca acacctatcc gtcctacctc tcgcagctgg
301 actcctgggg cgaccccaaa gccgcctatc gcctggaaca acctgttggc aggccgctgt
361 cctcctgctc ctacccacct agtgtcaagg aggagaatgt ctgctgcatg tacagcgcag
421 agaagcgggc gaaaagtggc cccgaggcag ctctctactc ccaccccttg ccggagtcct
481 gccttgggga gcacgaggta cccgtgccca gctactaccg cgccagcccg agctactccg
541 cgctggacaa gacgccccac tgttctgggg ccaacgactt cgaagcccct ttcgagcagc
601 gggccagtct caacccgcgc gccgaacatc tggaatcgcc tcagctgggg ggcaaagtga
661 gtttccctga gacccccaag tccgacagcc agacccccag ccccaatgaa atcaagacgg
721 agcagagcct ggcgggccct aaagggagcc cctcggagag cgaaaaggag agggccaaag
781 ctgccgactc cagcccagac acctcggata acgaagcgaa agaggagata aaggcagaaa
841 acaccacagg aaattggctg acagcaaaga gcggaaggaa gaagaggtgc ccctatacta
901 aacaccagac gctggaattg gagaaagaat ttctgttcaa tatgtatttg acgcgagagc
961 gccgcctgga gattagcaag accattaacc ttacagacag acaagtcaaa atctggtttc
1021 aaaatcgcag aatgaaactc aagaaaatga accgagagaa tcggatccgg gaactgacct
1081 ccaattttaa tttcacctga gagcgcggcc tctcctcctc ccttcccgct ccttcctctc
1141 cccgcccctc ctccctttgt gcctggtgat atattttttt ttcctccctg agtataaatg
1201 caatgcgact gcaaaaaagg caaagacctc agactctcct tccaagggac ctgtggttcg
1261 tgctgcgaag atgcttccac ttaaagcatg agaaatgggg tgccgggatg tggggtgtgg
1321 tgtgtgccct catagatggg ggtgggagtg tggctggtgt gtgtgtcaaa ccctcactca
1381 cccacgcact cacacacagc attctgttct ccatgcaaag ttaagatcga atccatccgc
1441 ttgtagggga aaaaaaggaa aaaaattaac cagagagggt ctgtaatctc gcagagcaca
1501 ggcagaatcg ttccttcctt gctgcatttc ctccttagac taatagacgt tttggaaagt
1561 tcggctagtg ttcgtgtgtt tgtcgtagca cccagagcct ccaccaaacc ctctccatgt
1621 ctttacctcc cagtcgctct aagaatctgc ttgaagtctc gtatttgtac tgctttctgc
1681 ttttctccca cccctcctag cacccccaca tcccccatct agtaacatct cagaaatttc
1741 atccagagga acaaaaaaat taaaaataga acatagcaaa gcaaagacag aatgcccccc
1801 cccaaatatt gtcctgtccc tgtctgggag ttgtgttatt taaagatatt ctgtatgttg
1861 tatcttttgc atgtagcttc cttaatggag aaaaaaaaat cctaataaat ttccagaatc
1921 ataatcctca aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1981 aaaaaaaaa
//