LOCUS BC001267 2191 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens RAB5A, member RAS oncogene family, mRNA (cDNA clone
MGC:5048 IMAGE:3463669), complete cds.
ACCESSION BC001267
VERSION BC001267.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2191)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2191)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 4 Row: j Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31543538.
FEATURES Location/Qualifiers
source 1..2191
/db_xref="H-InvDB:HIT000030273"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:5048 IMAGE:3463669"
/tissue_type="Cervix, carcinoma"
/clone_lib="NIH_MGC_12"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2191
/gene="RAB5A"
/db_xref="GeneID:5868"
/db_xref="HGNC:HGNC:9783"
/db_xref="MIM:179512"
CDS 166..813
/gene="RAB5A"
/codon_start=1
/product="RAB5A, member RAS oncogene family"
/protein_id="AAH01267.1"
/db_xref="GeneID:5868"
/db_xref="HGNC:HGNC:9783"
/db_xref="MIM:179512"
/translation="MASRGATRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQ
FHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDI
TNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFM
ETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSARGRGVDLTEPTQPTRNQCCSN"
BASE COUNT 726 a 388 c 422 g 655 t
ORIGIN
1 atcctacggg ccacgcctgg gccttgctgc caggaagctt cggccccgca gctcggcttg
61 ctgcggtctc aggtttcttt acctccggaa agaagaatat tggccccttg aattctggaa
121 gttcattgaa gagtctgaaa ttagggactt atttcaaatt tggacatggc tagtcgaggc
181 gcaacaagac ccaacgggcc aaatactgga aataaaatat gccagttcaa actagtactt
241 ctgggagagt ccgctgttgg caaatcaagc ctagtgcttc gttttgtgaa aggccaattt
301 catgaatttc aagagagtac cattggggct gcttttctaa cccaaactgt atgtcttgat
361 gacactacag taaagtttga aatatgggat acagctggtc aagaacgata ccatagccta
421 gcaccaatgt actacagagg agcacaagca gccatagttg tatatgatat cacaaatgag
481 gagtcctttg caagagcaaa aaattgggtt aaagaacttc agaggcaagc aagtcctaac
541 attgtaatag ctttatcggg aaacaaggcc gacctagcaa ataaaagagc agtagatttc
601 caggaagcac agtcctatgc agatgacaat agtttattat tcatggagac atccgctaaa
661 acatcaatga atgtaaatga aatattcatg gcaatagcta aaaaattgcc aaagaatgaa
721 ccacaaaatc caggagcaaa ttctgccaga ggaagaggag tagaccttac cgaacccaca
781 caaccaacca ggaatcagtg ttgtagtaac taaacctcta gtttgaacta gctggaatag
841 tcttctgctt cctaaatgtt aataacaatg gaattggagc atttaaccag cccagtatga
901 cttccaaaag aagagactta tgatagagtc aagtttctaa tacagaatta ttttaagtgt
961 tttgaactta atttttaata acatgcatgg gtccctctca ctaatgtttc aacaataggg
1021 aaaaatgaga actatgtgga cacttgtttc attggaaggt tagggggaat aatttctcat
1081 cactaggaat atagacaaat gactgtctgg gcccacacag ttaaccagcc catttctcca
1141 cactggtaca gtagtcacct gtgaaaaaaa aaattggaac ttactaattt gggcttttca
1201 aaaacattct ttgtttagaa ggagattcta aagttattta tgatgcttag ccatagtatt
1261 caggcaaatg ttcatttctc ctggtacctg tatttaaaat gtacattcca cattttaata
1321 aattaaccac aagaaaataa tcccacatat acaaggtcag gggtggggaa gagtattaat
1381 ggtatcttaa ttatacccag tctggttttt ttttttaaat ggggtaaaaa tcaaatgcaa
1441 ccccatcttg ttttaggaat tttgagaact aataaatgca ccttaatggt cagtgttcct
1501 ttcaaacatg tgagttcttt aacaaaaatg aaataaacca ggtgtctgtg atttctaatt
1561 aatcaccgct ggccattaca caggttttgt tgtttggggt ggggaggggg cttttgttcc
1621 cttttgacat aatatagtca atgcactaac aattatgtat attcaaactt gattatttta
1681 aattcgatct tcagctgtac tgtaaatagg gtactgcatt gtagtctcca tatctgtatt
1741 acttttctgt aatatttaag agttgcttaa aagcatacaa aatgtactgt tactaaaaca
1801 gctaattatt tctctctccc cctttgacag gaaggggctt cagttgttcc tccatggcta
1861 gaaccataat aaacaatgta cccgtaattt gtaacataaa gtattgcaat atgttagtaa
1921 caatcttgca gccttccttt ccaaagttca ttttattttg atcagttcag tatattgcac
1981 taattatttt aggtattttc attatatgaa agctaccatg tgtcagagat gatttaatct
2041 atttaagtgt tggactgcta ggagaacttg tacatttatg ataatgcaga attaggaaaa
2101 cggttcacca gtgtttagtt ttatattgag gtgctcaggt tggaataaag tggtataaaa
2161 agcaaaaaaa aaaaaaaaaa aaaaaaaaaa a
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