LOCUS BC001099 1852 bp mRNA linear HUM 04-NOV-2003
DEFINITION Homo sapiens selenoprotein O, mRNA (cDNA clone IMAGE:3510317),
partial cds.
ACCESSION BC001099
VERSION BC001099.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1852)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1852)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 28, 2003 this sequence version replaced BC001099.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 7 Row: l Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..1852
/db_xref="H-InvDB:HIT000050394"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3510317"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1852
/gene="SELO"
/gene_synonym="IMAGE3510317"
/db_xref="GeneID:83642"
CDS <1..1549
/gene="SELO"
/gene_synonym="IMAGE3510317"
/codon_start=2
/product="SELO protein"
/protein_id="AAH01099.3"
/db_xref="GeneID:83642"
/translation="LGDGAAMYLGEVCTANGERWELQLKGAGPTPFSRQADGRKVLRS
SIREFLCSEAMFHLGVPTTRAGACVTSESTVVRDVFYDGNPKYEQCTVVLRVASTFIR
FGSFEIFKSADEHTGRAGPSVGRNDIRVQLLDYVISSFYPEIQAAHASDSVQRNAAFF
REVTRRTARMVAEWQCVGFCHGVLNTDNMSILGLTIDYGPFGFLDRYDPDHVCNASDN
TGRYAYSKQPEVCRWNLRKLAEALQPELPLELGEAILAEEFDAEFQRHYLQKMRRKLG
LVQVELEEDGALVSKLLETMHLTGADFTNTFYLLSSFPVELESPGLAEFLARLMEQCA
SLEELRLAFRPQMDPRQLSMMLMLAQSNPQLFALMGTRAGIARELERVEQQSRLEQLS
AAELQSRNQGHWADWLQAYRARLDKDLEGAGDAAAWQAEHVRVMHANNPKYVLRNYIA
QNAIEAAERGDFSEVRRVLKLLETPYHCEAGAATDAEATEADGADGRQRSYSSKPPLW
AAELCVT"
misc_feature 2..1429
/gene="SELO"
/gene_synonym="IMAGE3510317"
/note="UPF0061; Region: Uncharacterized ACR, YdiU/UPF0061
family"
/db_xref="CDD:pfam02696"
BASE COUNT 395 a 555 c 593 g 309 t
ORIGIN
1 gctgggcgac ggcgccgcca tgtacctggg cgaggtgtgc acggcgaacg gcgagcgctg
61 ggagctgcag ctcaagggcg ccgggcccac gcccttctcc agacaggccg acggtcgcaa
121 ggtcctacgg tcaagcatcc gggagtttct atgcagcgaa gccatgttcc acctgggagt
181 ccccaccaca cgggccggcg cctgcgtcac gtccgagtcc acggtggtgc gcgacgtgtt
241 ctatgatggt aatcccaaat atgaacaatg cacggttgtg ttgcgtgtag cttccacttt
301 cataaggttt ggatcctttg agatttttaa gtctgcagat gagcacacag ggcgtgcagg
361 ccccagcgtg gggaggaacg acattcgagt gcagctgctc gactatgtca tcagctcctt
421 ttaccccgag atccaggctg ctcatgccag cgacagcgtg cagagaaatg ctgccttctt
481 ccgggaggtg acgcggcgca cggcgcggat ggtggccgag tggcagtgtg tgggcttctg
541 ccacggcgtg ctcaacaccg acaacatgag catcctgggg ctcaccatcg actacgggcc
601 ctttggcttc ctggacaggt acgaccccga ccacgtgtgc aatgcctccg acaacaccgg
661 ccgctacgcg tacagcaagc agcccgaggt gtgcaggtgg aacctgcgga agctggccga
721 ggccctgcag ccggaactgc ccctggagct gggggaggcc atcctggccg aggagtttga
781 cgccgagttc caaaggcact acctgcagaa gatgcgcagg aagctgggcc tcgtgcaggt
841 ggagctggag gaagacgggg cgctggtgtc caagctcctg gagaccatgc atctgaccgg
901 tgccgacttc acaaacacct tctacttgct gagctccttc ccagtggagc tagagtcgcc
961 aggcctggcg gaattcctgg ccaggctgat ggagcagtgt gcctccctgg aggagctgag
1021 gctggccttc cggccccaga tggatccccg gcagctatcc atgatgctga tgctggcgca
1081 gtcaaacccg cagctgttcg cgcttatggg cacccgggca ggcatcgcca gggagctgga
1141 gcgtgtggag cagcagtctc ggctggagca gctgagtgcg gcagagctgc agagcaggaa
1201 ccagggccac tgggctgact ggctacaggc gtacagagcc cggctggaca aggacctgga
1261 aggcgctggg gacgctgccg cctggcaggc tgagcacgtg cgcgtgatgc acgccaacaa
1321 cccgaagtac gtgctgagga actacatcgc gcagaatgcc atcgaggctg ccgagcgcgg
1381 ggacttctca gaggtgcggc gggtgctgaa actactggag accccttacc actgcgaggc
1441 gggggccgcc acagacgccg aggccacgga agccgacggg gcggacggca ggcagcgctc
1501 ctacagcagt aagcccccgc tctgggcagc agaactgtgc gtgacatgat cttcgtaacg
1561 gcctcggcac gctccacacc cctggagtct cccgaggccc ccatgtgctg ctgagtggcc
1621 aagatgatgc caggctgccc tatacactgg gggattctgc cctggcccat gcacacccgt
1681 ctttccatga tggcagagac atccagtcag gacctgaccc gtctctgtct gaggccggct
1741 cagcagtgca gcctggtccc tgggggctgg acccaggctc ctaaataaac cagcaactcc
1801 ctcgaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
//