LOCUS BC001084 958 bp mRNA linear HUM 30-SEP-2003
DEFINITION Homo sapiens sorting nexin 9, mRNA (cDNA clone IMAGE:2958415),
partial cds.
ACCESSION BC001084
VERSION BC001084.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 958)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 958)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC001084.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 2 Row: m Column: 4.
FEATURES Location/Qualifiers
source 1..958
/db_xref="H-InvDB:HIT000050393"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:2958415"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..958
/gene="SNX9"
/gene_synonym="SDP1"
/gene_synonym="SH3PX1"
/gene_synonym="WISP"
/db_xref="GeneID:51429"
/db_xref="MIM:605952"
CDS <1..853
/gene="SNX9"
/gene_synonym="SDP1"
/gene_synonym="SH3PX1"
/gene_synonym="WISP"
/codon_start=2
/product="SNX9 protein"
/protein_id="AAH01084.3"
/db_xref="GeneID:51429"
/db_xref="MIM:605952"
/translation="KQVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNF
RDEKEWKTGKRKAERDELAGVMIFSTMEPEAPDLDLVEIEQKCEAVGKFTKAMDDGVK
ELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYE
EIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKIT
LQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQA
LSRFPVM"
misc_feature 2..136
/gene="SNX9"
/gene_synonym="SDP1"
/gene_synonym="SH3PX1"
/gene_synonym="WISP"
/note="PX; Region: PX domain. PX domains bind to
phosphoinositides"
/db_xref="CDD:pfam00787"
BASE COUNT 315 a 194 c 248 g 201 t
ORIGIN
1 caaacaagtc acaggccgct ttgaagagga atttatcaaa atgcgcatgg agagacttca
61 ggcctggatg accaggatgt gtcgccatcc agtaatctca gaaagtgaag ttttccagca
121 gttcctaaat ttccgagatg agaaggaatg gaaaactgga aagaggaagg ccgagagaga
181 tgagctggcg ggagtcatga tattttccac catggaacca gaggcacctg acttggactt
241 agtagaaata gagcagaagt gcgaggctgt ggggaagttc accaaggcca tggatgacgg
301 cgtgaaggag ctgctgacgg tggggcagga gcactggaag cgctgcacgg gcccattacc
361 caaggaatat cagaagatag gaaaggcctt gcagagtttg gccacagtgt tcagttccag
421 tggctatcaa ggtgaaacag atctcaatga tgcaataaca gaagcaggaa agacttatga
481 agaaattgcc agtctcgtgg cagaacagcc aaagaaagat ctccatttcc tgatggaatg
541 taatcacgag tataaaggtt ttcttggctg cttccctgac atcattggca ctcacaaggg
601 agcaatagaa aaagtgaaag aaagtgacaa actagttgca acaagtaaaa tcaccctaca
661 agacaaacag aacatggtga agagagtcag catcatgtct tacgcgttgc aagctgagat
721 gaatcacttt cacagtaacc ggatctatga ttacaacagt gtcatccgcc tgtacctgga
781 gcagcaagtg caattttacg aaacgattgc agaaaagctg aggcaggccc tcagccgctt
841 tccagtgatg taggacagaa cgggccttga agagaatgcc gcgtgctttc tcctgacttg
901 gggcaatgca attcaaaact ttttttcccc tattattcag aaaaaaaaaa aaaaaaaa
//