LOCUS BC001063 1079 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens high-mobility group box 2, mRNA (cDNA clone MGC:2393
IMAGE:2963045), complete cds.
ACCESSION BC001063
VERSION BC001063.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1079)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1079)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC001063.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 2 Row: l Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein.
FEATURES Location/Qualifiers
source 1..1079
/db_xref="H-InvDB:HIT000030113"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2393 IMAGE:2963045"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1079
/gene="HMGB2"
/db_xref="GeneID:3148"
/db_xref="HGNC:HGNC:5000"
/db_xref="MIM:163906"
CDS 54..683
/gene="HMGB2"
/codon_start=1
/product="high-mobility group box 2"
/protein_id="AAH01063.1"
/db_xref="GeneID:3148"
/db_xref="HGNC:HGNC:5000"
/db_xref="MIM:163906"
/translation="MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKK
CSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAF
FLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIA
AYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEDEDEEEEDEDEE"
BASE COUNT 373 a 177 c 264 g 265 t
ORIGIN
1 ctctgcggga ctctgaggaa aagctcgcac caggtggacg cggatctgtc aacatgggta
61 aaggagaccc caacaagccg cggggcaaaa tgtcctcgta cgccttcttc gtgcagacct
121 gccgggaaga gcacaagaag aaacacccgg actcttccgt caatttcgcg gaattctcca
181 agaagtgttc ggagagatgg aagaccatgt ctgcaaagga gaagtcgaag tttgaagata
241 tggcaaaaag tgacaaagct cgctatgaca gggagatgaa aaattacgtt cctcccaaag
301 gtgataagaa ggggaagaaa aaggacccca atgctcctaa aaggccacca tctgccttct
361 tcctgttttg ctctgaacat cgcccaaaga tcaaaagtga acaccctggc ctatccattg
421 gggatactgc aaagaaattg ggtgaaatgt ggtctgagca gtcagccaaa gataaacaac
481 catatgaaca gaaagcagct aagctaaagg agaaatatga aaaggatatt gctgcatatc
541 gtgccaaggg caaaagtgaa gcaggaaaga agggccctgg caggccaaca ggctcaaaga
601 agaagaacga accagaagat gaggaggagg aggaggaaga agaagatgaa gatgaggagg
661 aagaggatga agatgaagaa taaatggcta tcctttaatg atgcgtgtgg aatgtgtgtg
721 tgtgctcagg caattatttt gctaagaatg tgaattcaag tgcagctcaa tactagcttc
781 agtataaaaa ctgtacagat ttttgtatag ctgataagat tctctgtaga gaaaatactt
841 ttaaaaaatg caggttgtag ctttttgatg ggctactcat acagttagat tttacagctt
901 ctgatgttga atgttcctaa atatttaatg gtttttttaa tttcttgtgt atggtagcac
961 agcaaacttg taggaattag tatcaatagt aaattttggg ttttttagga tgttgcattt
1021 cgttttttta aaaaaaattt tgtaataaaa ttatgtatat taaaaaaaaa aaaaaaaaa
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