LOCUS BC000901 1330 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens cold inducible RNA binding protein, mRNA (cDNA clone
MGC:5232 IMAGE:2900585), complete cds.
ACCESSION BC000901
VERSION BC000901.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1330)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1330)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 3 Row: g Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4502846.
FEATURES Location/Qualifiers
source 1..1330
/db_xref="H-InvDB:HIT000029990"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:5232 IMAGE:2900585"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1330
/gene="CIRBP"
/gene_synonym="CIRP"
/db_xref="GeneID:1153"
/db_xref="HGNC:HGNC:1982"
/db_xref="MIM:602649"
CDS 67..585
/gene="CIRBP"
/gene_synonym="CIRP"
/codon_start=1
/product="cold inducible RNA binding protein"
/protein_id="AAH00901.1"
/db_xref="GeneID:1153"
/db_xref="HGNC:HGNC:1982"
/db_xref="MIM:602649"
/translation="MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQ
RSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRG
FFRGGRGRGRGFSRGGGDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSY
RDSYDSYATHNE"
BASE COUNT 282 a 289 c 392 g 367 t
ORIGIN
1 gctcgggtcg ttgtggtgcg ctgtcttccc gcttgcgtca gggacctgcc cgactcagtg
61 gccgccatgg catcagatga aggcaaactt tttgttggag ggctgagttt tgacaccaat
121 gagcagtcgc tggagcaggt cttctcaaag tacggacaga tctctgaagt ggtggttgtg
181 aaagacaggg agacccagag atctcgggga tttgggtttg tcacctttga gaacattgac
241 gacgctaagg atgccatgat ggccatgaat gggaagtctg tagatggacg gcagatccga
301 gtagaccagg caggcaagtc gtcagacaac cgatcccgtg ggtaccgtgg tggctctgcc
361 gggggccggg gcttcttccg tgggggccga ggacggggcc gtgggttctc tagaggagga
421 ggggaccgag gctatggggg gaaccggttc gagtccagga gtgggggcta cggaggctcc
481 agagactact atagcagccg gagtcagagt ggtggctaca gtgaccggag ctcgggcggg
541 tcctacagag acagttacga cagttacgct acacacaacg agtaaaaacc cttcctgctc
601 aagatcgtcc ttccaatggc tgtgtgttta aagattgtgg gagcttcgct gaacgttaat
661 gtgtagtaaa tgcacctcct tgtattccca ctttcgtagt catttcggtt ctgatcttgt
721 caaacccagc ctgaccgctt ctgacgccgg gatggcctcg ttactagact tttcttttta
781 aggaagtgct gttttttttt gagggttttc aaaacatttt gaaaagcatt tacttttttg
841 accacgagcc atgagttttc aaaaaaatcg ggggttgtgt gggtttttgg tttttgtttt
901 agtttttggt tgcgttgcct tttttttttt agtggggttg gccccatgaa gtgggtgccc
961 cactcacttc tctgagatcg aacggactgt gaatccgctc tttgtcggaa gctgagcaag
1021 ctgtggcttt tttccaactc cgtgtgacgt ttctgagtgt agtgtggtag gaccccggcg
1081 ggtgtggcag caactgccct ggagccccag cccctgcgtc catctgtgct gtgcgcccca
1141 cagtagacgt gcagacgtcc ctgagaggtt cttgaagatg tttatttata ttgtcctttt
1201 ttactggaag acgtacgcat actccatcga tgttgtattt gcagtggctg aggaattctt
1261 gtacgcagtt ttctttggct ttacgaagcc gattaaaaga ccgtgtgaaa tgaaaaaaaa
1321 aaaaaaaaaa
//