LOCUS BC000719 2803 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ATG4 autophagy related 4 homolog B (S. cerevisiae),
mRNA (cDNA clone MGC:1353 IMAGE:3504267), complete cds.
ACCESSION BC000719
VERSION BC000719.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2803)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2803)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC000719.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 7 Row: i Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 47132612.
FEATURES Location/Qualifiers
source 1..2803
/db_xref="H-InvDB:HIT000029864_03"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1353 IMAGE:3504267"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2803
/gene="ATG4B"
/gene_synonym="AUTL1"
/gene_synonym="MGC1353"
/db_xref="GeneID:23192"
/db_xref="HGNC:HGNC:20790"
CDS 8..1189
/gene="ATG4B"
/gene_synonym="AUTL1"
/gene_synonym="MGC1353"
/codon_start=1
/product="ATG4 autophagy related 4 homolog B (S.
cerevisiae)"
/protein_id="AAH00719.1"
/db_xref="GeneID:23192"
/db_xref="HGNC:HGNC:20790"
/translation="MDAATLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILS
DVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRK
RQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDT
WSSLAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSP
WRPLVLLIPLRLGLTDINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIY
LDPHTTQPAVEPTDGCFIPDESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQ
QVKKLSLLGGALPMFELVEQQPSHLACPDVLNLSLDSSDVERLERFFDSEDEDFEILS
L"
BASE COUNT 561 a 783 c 847 g 612 t
ORIGIN
1 tgggaagatg gacgcagcta ctctgaccta cgacactctc cggtttgctg agtttgaaga
61 ttttcctgag acctcagagc ccgtttggat actgggtaga aaatacagca ttttcacaga
121 aaaggacgag atcttgtctg atgtggcatc tagactttgg tttacataca ggaaaaactt
181 tccagccatt ggggggacag gccccacctc ggacacaggc tggggctgca tgctgcggtg
241 tggacagatg atctttgccc aagccctggt gtgccggcac ctaggccgag attggaggtg
301 gacacaaagg aagaggcagc cagacagcta cttcagcgtc ctcaacgcat tcatcgacag
361 gaaggacagt tactactcca ttcaccagat agcgcaaatg ggagttggcg aaggcaagtc
421 cataggccag tggtacgggc ccaacactgt cgcccaggtc ctgaagaagc ttgctgtctt
481 cgatacgtgg agctccttgg cggtccacat tgcaatggac aacactgttg tgatggagga
541 aatcagaagg ttgtgcagga ccagcgttcc ctgtgcaggc gccactgcgt ttcctgcaga
601 ttccgaccgg cactgcaacg gattccctgc cggagctgag gtcaccaaca ggccgtcgcc
661 atggagaccc ctggtacttc tcattcccct gcgcctgggg ctcacggaca tcaacgaggc
721 ctacgtggag acgctgaagc actgcttcat gatgccccag tccctgggcg tcatcggagg
781 gaagcccaac agcgcccact acttcatcgg ctacgttggt gaggagctca tctacctgga
841 cccccacacc acgcagccag ccgtggagcc cactgatggc tgcttcatcc cggacgagag
901 cttccactgc cagcacccgc cgtgccgcat gagcatcgcg gagcttgacc cgtccatcgc
961 tgtggggttt ttctgtaaga ctgaagatga cttcaatgat tggtgccagc aagtcaaaaa
1021 gctgtctctg ctcggaggtg ccctgcccat gtttgagctg gtggagcagc agccttcaca
1081 tctggcctgc cccgacgtcc tgaacctgtc cctagattct tctgatgtag agcgactgga
1141 aagattcttc gactcagaag atgaagactt tgaaatcctg tccctttgaa aatcctgggg
1201 tcgggggtgg cacctgtgag agcctggggc tcctggtgcc gctgcgtttc atccatcccg
1261 cccgctcgcc tgccgagggc tgcgccccgt gctgcctccc cccagagggc cacccgctgt
1321 gctcgtggac tgaggctgcg ctgcccggga ggccttactg cttggtgtca gactgcccag
1381 ctcagagtgc ccgtcagggc ctgtgcatcc gcacgcggag ccgtctgtta ggagcttcca
1441 gagcgttctc tcgacactgc cagccccgtg ttagcacctg ggcctcagtc ccacttgctc
1501 ccaggcgccg gttctgtggt tggtttggaa ttaaagtcct gtttgaagtt gtcagacaca
1561 gacatgaatt tctggggcgc tccctgagtc agagtctcag aagacctgtg caggctggcg
1621 tgagaggagc ggcagccaca ctgcggcccc acgcccaagg attgggctgc tctcgagggg
1681 ggcgcgccca ccgctgtgtc ctctctgccc agcctggctt accaagggct acctcagtgg
1741 gagatgaggt tggaggaacg aaggcgaggt tcctccttgc tttggggaga aaagtattca
1801 ggaagtgggt gtgtgggaaa cctgaagatg gcgtgcacag gacacagcgt ggtcggcctg
1861 ggcagaaggg cggctggctg tcctggagct gctgctggag cctgccctca gagtgtccct
1921 ttccagtgct gtggcattct gtggcagctt ccccaggtgt ggtgacgggg ggggcggggc
1981 ctccacctgt gacagtcagg cttgagggtg gacggcgtgc ctctcccagg agccttcccc
2041 atgtccttgc cttgctgaga attgccctcc catgccgctg aggtgttagg tggtttaggg
2101 ccaaaagggg aaaaccactt gagtcttgtg gtgtgtggtg ggcagacacc acagggtggc
2161 atcacctggt ggcatttcca gaacctcagc cccgattcca gcacccacca ccgcctgacc
2221 ctgtgtaacc tgctgtcccg ggtcccagag tgcactctgc cccgctgctc tgctgcctgt
2281 cctgggaaag tagctttgcc ccactaggaa atgtaaacag gagggcttgg ggagcgtggg
2341 cacctttctc atgagcagct actgcggcgt tggcaggact cgctgctgct gctgctgctg
2401 cttgtgtagg tcggggagcc ggagatcccc gaggacgcgc gccggacagt cggcactgac
2461 cggcccacct ggtagcagag gacaccccca gccccccaag cattgaagac atagtgtatt
2521 tcctcgtatc ctttctccct tgggtgtagt tggggtgggg aagcagggaa ggctggtgcg
2581 atctccattc cttgggctcc acgtccgagt tcatggtgcg ccgctgtgct gggagctgca
2641 gtgggaatgt gtgggacacc ttgaccaaag gggagctttg tctcgtgtgt tttgaaaaag
2701 gcttaatgaa gagaatgttg ttcattctta gtagtatagt ttgcaattct taatggcaaa
2761 taataagttt cagtagaaaa caaaaaaaaa aaaaaaaaaa aaa
//