LOCUS BC000660 1549 bp mRNA linear HUM 04-OCT-2003
DEFINITION Homo sapiens interferon regulatory factor 3, mRNA (cDNA clone
MGC:1716 IMAGE:3347928), complete cds.
ACCESSION BC000660
VERSION BC000660.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1549)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1549)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC000660.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 5 Row: d Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4504724.
FEATURES Location/Qualifiers
source 1..1549
/db_xref="H-InvDB:HIT000050388"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1716 IMAGE:3347928"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1549
/gene="IRF3"
/db_xref="GeneID:3661"
/db_xref="MIM:603734"
CDS 156..1514
/gene="IRF3"
/codon_start=1
/product="IRF3 protein"
/protein_id="AAH00660.1"
/db_xref="GeneID:3661"
/db_xref="MIM:603734"
/translation="MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQ
DAQQEDFGIFQAWAEATGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKDPHD
PHKIYEFVNSGVGDFSQPDTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSL
AVAPEPCPQPLRSPSLDNPTPFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQ
TISCPEGLRLVGSEVGDRTLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWR
AGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIVGSWAPRS
DYLHGRKRTLTTLCPLVLCGGVMAPGPAVDQEARDGQGCAHVPQGLGRNGPGRGCLLP
GEYCGPAHFQQPPTLPHLRPVQGLPAGLGGGHGFPGPWGELSPRSSWCASNPPVPHHL
NQ"
misc_feature 156..488
/gene="IRF3"
/note="IRF; Region: interferon regulatory factor"
/db_xref="CDD:smart00348"
BASE COUNT 326 a 470 c 480 g 273 t
ORIGIN
1 tcaagaagtc gatcaaaaag aaagccccag cgctctagag ctcagctgac gggaaagggg
61 gtgcgcagcc tcgagtttga gagctacccg gagctccaag acaggggtgg gttccagctg
121 cccgcacgcc ccgaccttcc atcgtaggcc ggaccatggg aaccccaaag ccacggatcc
181 tgccctggct ggtgtcgcag ctggacctgg ggcaactgga gggcgtggcc tgggtgaaca
241 agagccgcac gcgcttccgc atcccttgga agcacggcct acggcaggat gcacagcagg
301 aggatttcgg aatcttccag gcctgggccg aggccactgg tgcatatgtt cccgggaggg
361 ataagccaga cctgccaacc tggaagagga atttccgctc tgccctcaac cgcaaagaag
421 ggttgcgttt agcagaggac cggagcaagg accctcacga cccacataaa atctacgagt
481 ttgtgaactc aggagttggg gacttttccc agccagacac ctctccggac accaatggtg
541 gaggcagtac ttctgatacc caggaagaca ttctggatga gttactgggt aacatggtgt
601 tggccccact cccagatccg ggacccccaa gcctggctgt agcccctgag ccctgccctc
661 agcccctgcg gagccccagc ttggacaatc ccactccctt cccaaacctg gggccctctg
721 agaacccact gaagcggctg ttggtgccgg gggaagagtg ggagttcgag gtgacagcct
781 tctaccgggg ccgccaagtc ttccagcaga ccatctcctg cccggagggc ctgcggctgg
841 tggggtccga agtgggagac aggacgctgc ctggatggcc agtcacactg ccagaccctg
901 gcatgtccct gacagacagg ggagtgatga gctacgtgag gcatgtgctg agctgcctgg
961 gtgggggact ggctctctgg cgggccgggc agtggctctg ggcccagcgg ctggggcact
1021 gccacacata ctgggcagtg agcgaggagc tgctccccaa cagcgggcat gggcctgatg
1081 gcgaggtccc caaggacaag gaaggaggcg tgtttgacct ggggcccttc attgtaggct
1141 cctgggcccc cagatctgat taccttcacg gaaggaagcg gacgctcacc acgctatgcc
1201 ctctggttct gtgtggggga gtcatggccc caggaccagc cgtggaccaa gaggctcgtg
1261 atggtcaagg ttgtgcccac gtgcctcagg gccttggtag aaatggcccg ggtagggggt
1321 gcctcctccc tggagaatac tgtggacctg cacatttcca acagccaccc actctccctc
1381 acctccgacc agtacaaggc ctacctgcag gacttggtgg agggcatgga tttccagggc
1441 cctggggaga gctgagccct cgctcctcat ggtgtgcctc caacccccct gttccccacc
1501 acctcaacca ataaactggt tcctgctatg aaaaaaaaaa aaaaaaaaa
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