LOCUS BC000614 1948 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens histone deacetylase 3, mRNA (cDNA clone MGC:2041
IMAGE:3345755), complete cds.
ACCESSION BC000614
VERSION BC000614.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1948)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1948)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 5 Row: i Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13128861.
FEATURES Location/Qualifiers
source 1..1948
/db_xref="H-InvDB:HIT000029776"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2041 IMAGE:3345755"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1948
/gene="HDAC3"
/gene_synonym="HD3"
/gene_synonym="RPD3"
/gene_synonym="RPD3-2"
/db_xref="GeneID:8841"
/db_xref="HGNC:HGNC:4854"
/db_xref="MIM:605166"
CDS 56..1342
/gene="HDAC3"
/gene_synonym="HD3"
/gene_synonym="RPD3"
/gene_synonym="RPD3-2"
/codon_start=1
/product="histone deacetylase 3"
/protein_id="AAH00614.1"
/db_xref="GeneID:8841"
/db_xref="HGNC:HGNC:4854"
/db_xref="MIM:605166"
/translation="MAKTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKK
MIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFE
FCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKY
HPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYC
LNVPLRDGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH
GECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISEELPYSEYFEYFAP
DFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQIHDVPADLLTYDRTDE
ADAEERGPEENYSRPEAPNEFYDGDHDNDKESDVEI"
BASE COUNT 454 a 507 c 505 g 482 t
ORIGIN
1 gcggcggccg cgggcggcgg gcggcggagg tgcggggcct gctcccgccg gcaccatggc
61 caagaccgtg gcctatttct acgaccccga cgtgggcaac ttccactacg gagctggaca
121 ccctatgaag ccccatcgcc tggcattgac ccatagcctg gtcctgcatt acggtctcta
181 taagaagatg atcgtcttca agccatacca ggcctcccag catgacatgt gccgcttcca
241 ctccgaggac tacattgact tcctgcagag agtcagcccc accaatatgc aaggcttcac
301 caagagtctt aatgccttca acgtaggcga tgactgccca gtgtttcccg ggctctttga
361 gttctgctcg cgttacacag gcgcatctct gcaaggagca acccagctga acaacaagat
421 ctgtgatatt gccattaact gggctggtgg tctgcaccat gccaagaagt ttgaggcctc
481 tggcttctgc tatgtcaacg acattgtgat tggcatcctg gagctgctca agtaccaccc
541 tcgggtgctc tacattgaca ttgacatcca ccatggtgac ggggttcaag aagctttcta
601 cctcactgac cgggtcatga cggtgtcctt ccacaaatac ggaaattact tcttccctgg
661 cacaggtgac atgtatgaag tcggggcaga gagtggccgc tactactgtc tgaacgtgcc
721 cctgcgggat ggcattgatg accagagtta caagcacctt ttccagccgg ttatcaacca
781 ggtagtggac ttctaccaac ccacgtgcat tgtgctccag tgtggagctg actctctggg
841 ctgtgatcga ttgggctgct ttaacctcag catccgaggg catggggaat gcgttgaata
901 tgtcaagagc ttcaatatcc ctctactcgt gctgggtggt ggtggttata ctgtccgaaa
961 tgttgcccgc tgctggacat atgagacatc gctgctggta gaagaggcca ttagtgagga
1021 gcttccctat agtgaatact tcgagtactt tgccccagac ttcacacttc atccagatgt
1081 cagcacccgc atcgagaatc agaactcacg ccagtatctg gaccagatcc gccagacaat
1141 ctttgaaaac ctgaagatgc tgaaccatgc acctagtgtc cagattcatg acgtgcctgc
1201 agacctcctg acctatgaca ggactgatga ggctgatgca gaggagaggg gtcctgagga
1261 gaactatagc aggccagagg cacccaatga gttctatgat ggagaccatg acaatgacaa
1321 ggaaagcgat gtggagattt aagagtggct tgggatgctg tgtcccaagg aatttctttt
1381 cacctcttgg ttgggctgga gggaaaagga gtggctccta gagtcctggg ggtcacccca
1441 gggcttttgc tgactctggg aaagagtctg gagaccacat ttggttctcg aaccatctac
1501 ctgcttttcc tctctctccc aaggcctgac aatggtacct attagggatg agatacagac
1561 aaggatagct atctgggaca ttattggcag tgggccctgg aggccagtcc ctagcccccc
1621 ttgcccctta tttcttccct gcttccctcg aacccagaga tttttgaggg atgaacgggt
1681 agacaaggac tgagattgcc tctgacttcc tcctcccctg ggttctgact tcttcctccc
1741 cttgcttcca gggaagatga agagagagag atttggaagg ggctctggct ccctaacacc
1801 tgaatcccag atgatgggaa gtatgttttc aagtgtgggg aggatatgaa aatgttctgt
1861 tctcactttt ggctttatgt ccattttacc actgttttta tccaataaac taagtcggta
1921 ttttttgtac aaaaaaaaaa aaaaaaaa
//