LOCUS BC000399 2250 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens acyl-Coenzyme A dehydrogenase, very long chain, mRNA
(cDNA clone MGC:8529 IMAGE:2822593), complete cds.
ACCESSION BC000399
VERSION BC000399.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2250)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2250)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC000399.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 1 Row: i Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4557234.
FEATURES Location/Qualifiers
source 1..2250
/db_xref="H-InvDB:HIT000029588"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:8529 IMAGE:2822593"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2250
/gene="ACADVL"
/gene_synonym="ACAD6"
/gene_synonym="LCACD"
/gene_synonym="VLCAD"
/db_xref="GeneID:37"
/db_xref="HGNC:HGNC:92"
/db_xref="MIM:609575"
CDS 93..2060
/gene="ACADVL"
/gene_synonym="ACAD6"
/gene_synonym="LCACD"
/gene_synonym="VLCAD"
/codon_start=1
/product="acyl-Coenzyme A dehydrogenase, very long chain"
/protein_id="AAH00399.1"
/db_xref="GeneID:37"
/db_xref="HGNC:HGNC:92"
/db_xref="MIM:609575"
/translation="MQAARMAASLGRQLLRLGGGSSRLTALLGQPRPGPARRPYAGGA
AQLALDKSDSHPSDALTRKKPAKAESKSFAVGMFKGQLTTDQVFPYPSVLNEEQTQFL
KELVEPVSRFFEEVNDPAKNDALEMVEETTWQGLKELGAFGLQVPSELGGVGLCNTQY
ARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTE
PSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVK
EKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAM
HILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEKIHNFGLIQEKLARMVMLQYV
TESMAYMVSANMDQGATDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGVER
VLRDLRIFRIFEGTNDILRLFVALQGCMDKGKELSGLGSALKNPFGNAGLLLGEAGKQ
LRRRAGLGSGLSLSGLVHPELSRSGELAVRALEQFATVVEAKLIKHKKGIVNEQFLLQ
RLADGAIDLYAMVVVLSRASRSLSEGHPTAQHEKMLCDTWCIEAAARIREGMAALQSD
PWQQELYRNFKSISKALVERGGVVTSNPLGF"
BASE COUNT 503 a 589 c 709 g 449 t
ORIGIN
1 gggcgccagg acgtgggcgt gcaggacgcg ggcgtgcagg acgccagagc tgggtcagag
61 ctcgagccag cggcgcccgg agagattcgg agatgcaggc ggctcggatg gccgcgagct
121 tggggcggca gctgctgagg ctcgggggcg gaagctcgcg gctcacggcg ctcctggggc
181 agccccggcc cggccctgcc cggcggccct atgccggggg tgccgctcag ctggctctgg
241 acaagtcaga ttcccacccc tctgacgctc tgaccaggaa aaaaccggcc aaggcggaat
301 ctaagtcctt tgctgtggga atgttcaaag gccagctcac cacagatcag gtgttcccat
361 acccgtccgt gctcaacgaa gagcagacac agtttcttaa agagctggtg gagcctgtgt
421 cccgtttctt cgaggaagtg aacgatcccg ccaagaatga cgctctggag atggtggagg
481 agaccacttg gcagggcctc aaggagctgg gggcctttgg tctgcaagtg cccagtgagc
541 tgggtggtgt gggcctttgc aacacccagt acgcccgttt ggtggagatc gtgggcatgc
601 atgaccttgg cgtgggcatt accctggggg cccatcagag catcggtttc aaaggcatcc
661 tgctctttgg cacaaaggcc cagaaagaaa aatacctccc caagctggca tctggggaga
721 ctgtggccgc tttctgtcta accgagccct caagcgggtc agatgcagcc tccatccgaa
781 cctctgctgt gcccagcccc tgtggaaaat actataccct caatggaagc aagctttgga
841 tcagtaatgg gggcctagca gacatcttca cggtctttgc caagacacca gttacagatc
901 cagccacagg agccgtgaag gagaagatca cagcttttgt ggtggagagg ggcttcgggg
961 gcattaccca tgggccccct gagaagaaga tgggcatcaa ggcttcaaac acagcagagg
1021 tgttctttga tggagtacgg gtgccatcgg agaacgtgct gggtgaggtt gggagtggct
1081 tcaaggttgc catgcacatc ctcaacaatg gaaggtttgg catggctgcg gccctggcag
1141 gtaccatgag aggcatcatt gctaaggcgg tagatcatgc cactaatcgt acccagtttg
1201 gggagaaaat tcacaacttt gggctgatcc aggagaagct ggcacggatg gttatgctgc
1261 agtatgtaac tgagtccatg gcttacatgg tgagtgctaa catggaccag ggagccacgg
1321 acttccagat agaggccgcc atcagcaaaa tctttggctc ggaggcagcc tggaaggtga
1381 cagatgaatg catccaaatc atggggggta tgggcttcat gaaggaacct ggagtagagc
1441 gtgtgctccg agatcttcgc atcttccgga tctttgaggg gacaaatgac attcttcggc
1501 tgtttgtggc tctgcagggc tgtatggaca aaggaaagga gctctctggg cttggcagtg
1561 ctctaaagaa tccctttggg aatgctggcc tcctgctagg agaggcaggc aaacagctga
1621 ggcggcgggc agggctgggc agcggcctga gtctcagcgg acttgtccac ccggagttga
1681 gtcggagtgg cgagctggca gtacgggctc tggagcagtt tgccactgtg gtggaggcca
1741 agctgataaa acacaagaag gggattgtca atgaacagtt tctgctgcag cggctggcag
1801 acggggccat cgacctctat gccatggtgg tggttctctc gagggcctca agatccctga
1861 gtgagggcca ccccacggcc cagcatgaga aaatgctctg tgacacctgg tgtatcgagg
1921 ctgcagctcg gatccgagag ggcatggccg ccctgcagtc tgacccctgg cagcaagagc
1981 tctaccgcaa cttcaaaagc atctccaagg ccttggtgga gcggggtggt gtggtcacca
2041 gcaacccact tggcttctga atactcccgg ccagggcctg tcccagttat gtgccttccc
2101 tcaagccaaa gccgaagccc ctttccttaa ggccctggtt tgtcccgaag gggcctagtg
2161 ttcccagcac tgtgcctgct ctcaagagca cttactgcct cgcaaataat aaaaatttct
2221 agccagtcaa aaaaaaaaaa aaaaaaaaaa
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