LOCUS BC000397 1669 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens G patch domain and KOW motifs, mRNA (cDNA clone
MGC:8517 IMAGE:2822421), complete cds.
ACCESSION BC000397
VERSION BC000397.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1669)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1669)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Nov 6, 2003 this sequence version replaced BC000397.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 1 Row: i Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 39725663.
FEATURES Location/Qualifiers
source 1..1669
/db_xref="H-InvDB:HIT000029586"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:8517 IMAGE:2822421"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1669
/gene="GPKOW"
/gene_synonym="GPATC5"
/gene_synonym="T54"
/db_xref="GeneID:27238"
/db_xref="HGNC:HGNC:30677"
CDS 8..1438
/gene="GPKOW"
/gene_synonym="GPATC5"
/gene_synonym="T54"
/codon_start=1
/product="G patch domain and KOW motifs"
/protein_id="AAH00397.1"
/db_xref="GeneID:27238"
/db_xref="HGNC:HGNC:30677"
/translation="MADSKEGVLPLTAASTAPISFGFTRTSARRRLADSGDGAGPSPE
EKDFLKTVEGRELQSVKPQEAPKELVIPLIQNGHRRQPPARPPGPSTDTGALADGVVS
QAVKELIAESKKSLEERENAGVDPTLAIPMIQKGCTPSGEGADSEPRAETVPEEANYE
AVPVEAYGLAMLRGMGWKPGEGIGRTFNQVVKPRVNSLRPKGLGLGANLTEAQALTPT
GPSRMPRPDEEQEKDKEDQPQGLVPGGAVVVLSGPHRGLYGKVEGLDPDNVRAMVRLA
VGSRVVTVSEYYLRPVSQQEFDKNTLDLRQQNGTASSRKTLWNQELYIQQDNSERKRK
HLPDRQDGPAAKSEKAAPRSQHWLHRDLRVRFVDNMYKGGQYYNTKMIIEDVLSPDTC
VCRTDEGRVLEGLREDMLETLVPKAEGDRVMVVLGPQTGRVGHLLSRDRARSRALVQL
PRENQVVELHYDAICQYMGPSDTDDD"
BASE COUNT 426 a 428 c 518 g 297 t
ORIGIN
1 gagcaagatg gctgactcca aagagggtgt tttgccgctg acggctgctt ccactgcccc
61 aatttcattc ggcttcactc gcacgtccgc acggaggcgg ctggccgact cgggagacgg
121 cgcggggcca tctccggagg agaaggattt cttgaaaacc gtggaaggga gggagctgca
181 gagtgtgaag ccccaggagg cccccaagga actcgtcatc cctttgatcc agaatggcca
241 tcgcaggcag ccaccagccc ggccccctgg gccatccaca gatactgggg ccttggcgga
301 tggggtggtg tcccaggctg tgaaggagct cattgcggaa tccaagaagt ctctggaaga
361 gagagagaat gcgggtgtcg accccacgct cgctatcccc atgatccaga aaggatgcac
421 ccccagcggg gaaggggcag acagcgaacc ccgggcagag acagtgccag aggaggctaa
481 ttatgaggcg gtccccgtgg aggcctatgg gctggccatg ctgcggggca tgggctggaa
541 acctggcgag ggcatcggcc gcaccttcaa tcaagtagtg aagccccgtg tcaactcact
601 gaggcccaag gggttagggc tgggtgccaa cctgaccgag gcccaggcct tgacccccac
661 tggcccctcc cgcatgccaa gaccagatga ggagcaagag aaagataagg aagatcagcc
721 tcaagggctg gtgcctggag gagctgtggt ggttctttct ggccctcacc gaggcctcta
781 tgggaaggtg gaaggccttg atcctgacaa tgttcgggcc atggttcgtc tggctgtggg
841 gagccgggtg gtgactgtta gtgagtacta cctgcggcct gtctcccagc aggagtttga
901 caagaacacc ttggatctca ggcaacagaa cggaactgcc tcatcacgga agaccctctg
961 gaatcaagaa ctctacatcc agcaggacaa ctcagagagg aagcggaaac accttccaga
1021 ccgacaggat gggcctgcag ccaagagtga gaaagcagcc cccagaagtc agcactggtt
1081 gcacagggac ctgcgtgtgc ggtttgtgga caacatgtac aaaggaggcc aatattacaa
1141 caccaagatg ataattgaag atgtcctaag cccagatacc tgtgtatgtc ggacagatga
1201 aggccgagtc ctggaaggcc tgagggaaga catgctggag accctggttc ccaaggcaga
1261 gggtgaccgt gtgatggtgg tgctgggccc acagactgga agggtgggac atttgctgag
1321 ccgggacaga gcacggagcc gggctttggt gcaactgcca agagaaaatc aggtggtgga
1381 gcttcactac gatgccatct gccagtacat gggccctagt gacacagatg atgactgacc
1441 catgggactc ctcccatccc ccaggctggt accagttctg taccatatga gaaagttgcc
1501 ttcagaaggt gggaagatca ttgttccatc ctctacttct ggtgcagtcc tgggacaagg
1561 acaagggaaa gggatgggtg aaccagtagg gaagctagaa acaaacccaa tatttaccaa
1621 aatttagggt ataataaaaa ccatttcaag taaaaaaaaa aaaaaaaaa
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