LOCUS BC000391 1056 bp mRNA linear HUM 06-NOV-2003
DEFINITION Homo sapiens nth endonuclease III-like 1 (E. coli), mRNA (cDNA
clone IMAGE:2821314), partial cds.
ACCESSION BC000391
VERSION BC000391.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1056)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1056)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Nov 6, 2003 this sequence version replaced BC000391.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 1 Row: e Column: 24.
FEATURES Location/Qualifiers
source 1..1056
/db_xref="H-InvDB:HIT000029580"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:2821314"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1056
/gene="NTHL1"
/gene_synonym="NTH1"
/gene_synonym="OCTS3"
/db_xref="GeneID:4913"
/db_xref="MIM:602656"
CDS <1..918
/gene="NTHL1"
/gene_synonym="NTH1"
/gene_synonym="OCTS3"
/codon_start=1
/product="NTHL1 protein"
/protein_id="AAH00391.2"
/db_xref="GeneID:4913"
/db_xref="MIM:602656"
/translation="GMTALSARMLTRSRSLGPGAGPRGCREEPGPLRRREAAAEARKS
HSPVKRPRKAQRLRVAYEGSDSEKGEGAEPLKVPVWEPQDWQQQLVNIRAMRNKKDAP
VDHLGTEHCYDSSAPPKVRRYQVLLSLMLSSQTKDQVTAGAMQRLRARGLTVDSILQT
DDATLGKLIYPVGFWRSKVKYIKQTSAILQQHYGGDIPASVAELVALPGVGPKMAHLA
MAVAWGTVSGIAVDTHVHRIANRLRWTKKATKSPEETRAALEEWLPRELWHEINGLLV
GFGQQTCLPVHPRCHACLNQALCPAAQGL"
misc_feature 391..840
/gene="NTHL1"
/gene_synonym="NTH1"
/gene_synonym="OCTS3"
/note="ENDO3c; Region: endonuclease III"
/db_xref="CDD:smart00478"
misc_feature 844..906
/gene="NTHL1"
/gene_synonym="NTH1"
/gene_synonym="OCTS3"
/note="FES; Region: iron-sulpphur binding domain in
DNA-(apurinic or apyrimidinic site) lyase (subfamily of
ENDO3)"
/db_xref="CDD:smart00525"
BASE COUNT 239 a 300 c 352 g 165 t
ORIGIN
1 ggcatgaccg ccttgagcgc gaggatgctg acccggagcc ggagcctggg acccggggct
61 gggccgcggg ggtgtaggga ggagcccggg cctctccgga gaagagaggc tgcagcagaa
121 gcgaggaaaa gccacagccc cgtgaagcgt ccgcggaaag cacagagact gcgtgtggcc
181 tatgagggct cggacagtga gaaaggtgag ggggctgagc ccctcaaggt gccagtctgg
241 gagccccagg actggcagca acagctggtc aacatccgtg ccatgaggaa caaaaaggat
301 gcacctgtgg accatctggg gactgagcac tgctatgact ccagtgcccc cccaaaggta
361 cgcaggtacc aggtgctgct gtcactgatg ctctccagcc aaaccaaaga ccaggtgacg
421 gcgggcgcca tgcagcgact gcgggcgcgg ggcctgacgg tggacagcat cctgcagaca
481 gatgatgcca cgctgggcaa gctcatctac cccgtcggtt tctggaggag caaggtgaaa
541 tacatcaagc agaccagcgc catcctgcag cagcactacg gtggggacat cccagcctct
601 gtggccgagc tggtggcgct gccgggtgtt gggcccaaga tggcacacct ggctatggct
661 gtggcctggg gcactgtgtc aggcattgca gtggacacgc atgtgcacag aatcgccaac
721 aggctgaggt ggaccaagaa ggcaaccaag tccccagagg agacccgcgc cgccctggag
781 gagtggctgc ctagggagct gtggcacgag atcaatggac tcttggtggg cttcggccag
841 cagacctgtc tgcctgtgca ccctcgctgc cacgcctgcc tcaaccaagc cctctgcccg
901 gccgcccagg gtctctgatg gccgcatggc tctggccgag gtgccgctgt ggccaccgtc
961 tgtgaagtgg ctttacgctt caggaagcca cgcctgttga ataaagcttt ggtgtgtttg
1021 cagatggaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//