LOCUS BC000387 1056 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens LSM4 homolog, U6 small nuclear RNA associated (S.
cerevisiae), mRNA (cDNA clone MGC:8433 IMAGE:2821171), complete
cds.
ACCESSION BC000387
VERSION BC000387.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1056)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1056)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 20, 2003 this sequence version replaced BC000387.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 1 Row: e Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 33620778.
FEATURES Location/Qualifiers
source 1..1056
/db_xref="H-InvDB:HIT000029576"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:8433 IMAGE:2821171"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1056
/gene="LSM4"
/gene_synonym="YER112W"
/db_xref="GeneID:25804"
/db_xref="HGNC:HGNC:17259"
/db_xref="MIM:607284"
CDS 52..471
/gene="LSM4"
/gene_synonym="YER112W"
/codon_start=1
/product="LSM4 homolog, U6 small nuclear RNA associated
(S. cerevisiae)"
/protein_id="AAH00387.1"
/db_xref="GeneID:25804"
/db_xref="HGNC:HGNC:17259"
/db_xref="MIM:607284"
/translation="MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVI
CTSRDGDKFWRMPECYIRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQKGR
GMGGAGRGVFGGRGRGGIPGTGRGQPEKKPGRQAGKQ"
BASE COUNT 247 a 283 c 318 g 208 t
ORIGIN
1 gtgcagcggc ggcggcggaa gtggccggcg agcccggtcc ccgccggcac catgcttccc
61 ttgtcactgc tgaagacggc tcagaatcac cccatgttgg tggagctgaa aaatggggag
121 acgtacaatg gacacctggt gagctgcgac aactggatga acattaacct gcgagaagtc
181 atctgcacgt ccagggacgg ggacaagttc tggcggatgc ccgagtgcta catccgcggc
241 agcaccatca agtacctgcg catccccgac gagatcatcg acatggtcaa ggaggaggtg
301 gtggccaagg gccgcggccg cggaggcctg cagcagcaga agcagcagaa aggccgcggc
361 atgggcggcg ctggccgagg tgtgtttggt ggccggggcc gaggtgggat cccgggcaca
421 ggcagaggcc agccagagaa gaagcctggc agacaggcgg gcaaacagtg agcgcccacc
481 cagaccggct gctgcgcccc ctcctgccag ggtggcgatt ccgctccaca gtctcggacg
541 gatctgctca gaaaggaaga ggcaggcgcc agggggaacc cccttcgtgt tttgtgaccc
601 tcccttttag gtgaagcccc tttttcttgc taaaaccggc aattctccgg ttagaaatgt
661 tacttggtgt tttttggttt tgtgaaacgg ccgtcccaaa gctggctgga ttcctagaag
721 agtctgtgtt gaaggcatct ttcaagccct cgctctggtt ctcagggcag cattttccag
781 gcgggtttgt tttgcatttc ttggagcctc tccgagcagc aaccagacgg gagattttta
841 ttttaagctg ttcatgctgg gactgacagc ctgcagggtt tccttgggcg cggccccaaa
901 attgccttca aaacaaaccc gggacggttg aaagccttcg aaccgtgcag gggatgcctc
961 gggccctggc ccttcgcttc ctctcttgtg ttatggaaat aaaaacaaat aaaactacac
1021 actgcaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//