LOCUS BC000357 1982 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens sorting nexin 1, mRNA (cDNA clone MGC:8664
IMAGE:2964409), complete cds.
ACCESSION BC000357
VERSION BC000357.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1982)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1982)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Nov 6, 2003 this sequence version replaced BC000357.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 1 Row: o Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23111033.
FEATURES Location/Qualifiers
source 1..1982
/db_xref="H-InvDB:HIT000029549"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:8664 IMAGE:2964409"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1982
/gene="SNX1"
/gene_synonym="HsT17379"
/gene_synonym="MGC8664"
/gene_synonym="SNX1A"
/db_xref="GeneID:6642"
/db_xref="HGNC:HGNC:11172"
/db_xref="MIM:601272"
CDS 11..1579
/gene="SNX1"
/gene_synonym="HsT17379"
/gene_synonym="MGC8664"
/gene_synonym="SNX1A"
/codon_start=1
/product="sorting nexin 1"
/protein_id="AAH00357.1"
/db_xref="GeneID:6642"
/db_xref="HGNC:HGNC:11172"
/db_xref="MIM:601272"
/translation="MASGGGGCSASERLPPPFPGLEPESEGAAGGSEPEAGDSDTEGE
DIFTGAAVVSKHQSPKITTSLLPINNGSKENGIHEEQDQEPQDLFADATVELSLDSTQ
NNQKKVLAKTLISLPPQEATNSSKPQPTYEELEEEEQEDQFDLTVGITDPEKIGDGMN
AYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIG
MTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGT
QTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLV
NHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLL
AELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKPDKLQQAK
DEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLETLLYSQQQLA
KYWEAFLPEAKAIS"
BASE COUNT 580 a 464 c 500 g 438 t
ORIGIN
1 gtggaagaag atggcgtcgg gtggtggtgg ctgtagcgct tcggagagac tgcctccgcc
61 cttccccggc ctggagccgg agtccgaggg ggcggccggg ggatcagaac ccgaggctgg
121 ggacagcgac accgaggggg aggacatttt caccggcgcc gcggtggtca gtaaacatca
181 gtctccaaag ataactacat cccttcttcc catcaacaat ggctccaaag aaaatgggat
241 ccatgaagaa caagaccaag agccacagga tctctttgca gatgccacag tggagctatc
301 cttggacagc acacaaaata atcagaagaa ggtgctagcc aaaacactca tttctcttcc
361 tcctcaggaa gccacaaatt cttcgaagcc ccagccaacc tatgaggagc tagaggaaga
421 agaacaggag gatcaatttg atttgacagt cggtataact gatcctgaga agatagggga
481 tggtatgaat gcatatgtag cctacaaagt tacaacacag acaagcttac cattgttcag
541 aagcaaacag tttgcagtaa aaagaagatt tagtgacttt ctgggtcttt atgagaagct
601 ttccgagaag cactctcaga atggcttcat tgtccctcca cccccggaga agagcctcat
661 agggatgaca aaagtgaaag ttgggaagga agattcttct tctgcagaat ttcttgaaaa
721 acggagggcc gctttagaaa ggtaccttca gaggattgta aatcatccta ccatgttaca
781 ggaccctgac gtcagagagt tcttggaaaa agaagagctg ccacgtgccg tgggtaccca
841 gacattgagt ggtgctggtc tcctcaagat gttcaacaaa gccacagatg ccgtcagcaa
901 aatgaccatc aagatgaatg aatcagacat ttggtttgag gagaagctcc aggaggtaga
961 gtgtgaggag cagcgcttac ggaaactgca tgctgttgta gaaactctag tcaaccatag
1021 gaaagagcta gcgctgaaca cagcccagtt tgcaaagagt ctagccatgc ttgggagctc
1081 tgaggacaac acggcattgt cacgggcact ctcccagctg gctgaggtgg aagaaaaaat
1141 tgagcagctc caccaggaac aggccaacaa tgacttcttc ctccttgctg agctcctgag
1201 tgactacatt cgcctcctgg ccatagtccg cgctgccttc gaccagcgca tgaagacatg
1261 gcagcgctgg caggatgccc aagccacact gcagaagaag cgggaggccg aggctcggct
1321 gctgtgggcc aacaagcctg ataagctgca gcaggccaag gacgagatcc tcgagtggga
1381 gtctcgggtg actcaatatg aaagggactt cgagaggatt tcaacagtgg tccgaaaaga
1441 agtgatacgg tttgagaaag agaaatccaa ggacttcaag aaccacgtga tcaagtacct
1501 tgagacactc ctttactcac agcagcagct ggcaaagtac tgggaagcct tccttcctga
1561 ggcaaaggcc atctcctaat ggaccaagga ccccagagcc cacctgtgtg acgctgcctt
1621 tttatacact gtcctcctcc accttgatgg acccctagtg atgcatcctg cctaggctgg
1681 acttaacccc ttcctccctg tccccacgac caactgtccc cagttactct aaccgttatt
1741 tcatttagct tccatatata ttttcttacc taagagaata gtttcctgct ttaagcaaaa
1801 gacctacaat aggtggtgga attatgggat ggggtggagt attgatataa atatataaat
1861 acaaatgtat atttttcagg atgtggttta ggaactggga ataacgtttt ctgttactcc
1921 tgatggtgcc atgaaaaggt tatgtaataa aatattttaa aatcaaaaaa aaaaaaaaaa
1981 aa
//