LOCUS BC000244 1718 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens spastic paraplegia 21 (autosomal recessive, Mast
syndrome), mRNA (cDNA clone MGC:816 IMAGE:3357388), complete cds.
ACCESSION BC000244
VERSION BC000244.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1718)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1718)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (14-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 6 Row: c Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 42544234.
FEATURES Location/Qualifiers
source 1..1718
/db_xref="H-InvDB:HIT000029454"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:816 IMAGE:3357388"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1718
/gene="SPG21"
/gene_synonym="ACP33"
/gene_synonym="BM-019"
/gene_synonym="GL010"
/gene_synonym="MAST"
/db_xref="GeneID:51324"
/db_xref="HGNC:HGNC:20373"
/db_xref="MIM:608181"
CDS 177..1103
/gene="SPG21"
/gene_synonym="ACP33"
/gene_synonym="BM-019"
/gene_synonym="GL010"
/gene_synonym="MAST"
/codon_start=1
/product="spastic paraplegia 21 (autosomal recessive, Mast
syndrome)"
/protein_id="AAH00244.1"
/db_xref="GeneID:51324"
/db_xref="HGNC:HGNC:20373"
/db_xref="MIM:608181"
/translation="MGEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRC
PLIFLPPVSGTADVFFRQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDK
VHLFGASLGGFLAQKFAEYTHKSPRVHSLILCNSFSDTSIFNQTWTANSFWLMPAFML
KKIVLGNFSSGPVDPMMADAIDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIP
VTIMDVFDQSALSTEAKEEMYKLYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQF
HGTKYAAIDPSMVSAEELEVQKGSLGISQEEQ"
BASE COUNT 416 a 389 c 389 g 524 t
ORIGIN
1 gcacgcaccg cgcagcctgc tgtgcccgtg ggtcccgagt gctccgccgc ccgccccgac
61 ccgggcccag ccgcctccac ggcccgcgct cgtactggag cgaagagcgg cctcctgaag
121 gaggggaagg gacgtggggg cggccacggc aggattaacc tccatttcag ctaatcatgg
181 gagagattaa agtctctcct gattataact ggtttagagg tacagttccc cttaaaaaga
241 ttattgtgga tgatgatgac agtaagatat ggtcgctcta tgacgcgggc ccccgaagta
301 tcaggtgtcc tctcatattc ctgccccctg tcagtggaac tgcagatgtc tttttccggc
361 agattttggc tctgactgga tggggttacc gggttatcgc tttgcagtat ccagtttatt
421 gggaccatct cgagttctgt gatggattca gaaaactttt agaccattta caattggata
481 aagttcatct ttttggcgct tctttgggag gctttttggc ccagaaattt gctgaataca
541 ctcacaaatc tcctagagtc cattccctaa tcctctgcaa ttccttcagt gacacctcta
601 tcttcaacca aacttggact gcaaacagct tttggctgat gcctgcattt atgctcaaaa
661 aaatagttct tggaaatttt tcatctggcc cggtggaccc tatgatggct gatgccattg
721 atttcatggt agacaggcta gaaagtttgg gtcagagtga actggcttca agacttacct
781 tgaattgtca aaattcttat gtggaacctc ataaaattcg ggacatacct gtaactatta
841 tggatgtgtt tgatcagagt gcgctttcaa ctgaagctaa agaagaaatg tacaagctgt
901 atcctaatgc ccgaagagct catctgaaaa caggaggcaa tttcccatac ctgtgcagaa
961 gtgcagaggt caatctttat gtacagatac atttgctgca attccatgga accaaatacg
1021 cggccattga cccatcaatg gtcagtgccg aggagcttga ggtgcagaaa ggcagccttg
1081 gcatcagcca ggaggagcag tagtgtgtct ctcgctgtca atgatgagtt gacccggtgt
1141 gttcttgtat agtcagtggc atcagcaccc gtcagccggc cttttccttc aggttcgtca
1201 ggctcaccgg ttctcactgt gtctgggaag taggactgat ggtcatcttc atgacaggcg
1261 gcatctccac taagcctgtg taactgttcc ctctttggtt ttcttagctt ttgaatttga
1321 agaagtactt ttgaagactc ccattttaag aaccgtgcag attttgctac caaaagtctt
1381 caccactgtg ttcttaagtg aatgttaatt tctgaggttt gggactttgt ggtggttttt
1441 ttcttctttt cttttccatt cttctttctt tctttttatg ttgtttgctg taaatgctgc
1501 acatccagat tgcatatcag gacattggtt attttatgct ttcttggata taaccatgat
1561 cagagtgcca tggccactac cccactgttt gctctcctgc aaatcaactg cttttaattt
1621 acacttaaac aaattgtttt gagtgttagc tactgccttt ctagatatta gtcatttgga
1681 ataaaaattc aatttcactg aaaaaaaaaa aaaaaaaa
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