LOCUS BC000172 1806 bp mRNA linear HUM 30-SEP-2003
DEFINITION Homo sapiens aryl hydrocarbon receptor nuclear translocator-like 2,
mRNA (cDNA clone IMAGE:3445178), partial cds.
ACCESSION BC000172
VERSION BC000172.3
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1806)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1806)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC000172.2.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 3 Row: d Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 19923556.
FEATURES Location/Qualifiers
source 1..1806
/db_xref="H-InvDB:HIT000029405"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3445178"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1806
/gene="ARNTL2"
/gene_synonym="BMAL2"
/gene_synonym="CLIF"
/gene_synonym="MOP9"
/db_xref="GeneID:56938"
CDS <1..1737
/gene="ARNTL2"
/gene_synonym="BMAL2"
/gene_synonym="CLIF"
/gene_synonym="MOP9"
/codon_start=1
/product="ARNTL2 protein"
/protein_id="AAH00172.3"
/db_xref="GeneID:56938"
/translation="GKVLREENQCIAPVVSSRVSPGTRPTAMGSFSSHMTEFPRKRKG
SDSDPSQEAHSQTEKRRRDKMNNLIEELSAMIPQCNPMARKLDKLTVLRMAVQHLRSL
KGLTNSYVGSNYRPSFLQDNELRHLILKTAEGFLFVVGCERGKILFVSKSVSKILNYD
QASLTGQSLFDFLHPKDVAKVKEQLSSFDISPREKLIDAKTGLQVHSNLHAGRTRVYS
GSRRSFFCRIKSCKISVKEEHGCLPNSKKKEHRKFYTIHCTGYLRSWPPNIVGMEEER
NSKKDNSNFTCLVAIGRLQPYIVPQNSGEINVKPTEFITRFAVNGKFVYVDQRATAIL
GYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKFRAKDGSFVTLKSQ
WFSFTNPWTKELEYIVSVNTLVLGHSEPGEASFLPCSSQSSEESSRQSCMSVPGMSTG
TVLGAGSIGTDIANEILDLQRLQSSSYLDDSSPTGLMKDTHTVNCRSMSNKELFPPSP
SEMGELEATRQNQSTVAVHSHEPLLSDGAQLDFDALCDNDDTAMAAFMNYLEAEGGLG
DPGDFSDIQWTL"
misc_feature 154..309
/gene="ARNTL2"
/gene_synonym="BMAL2"
/gene_synonym="CLIF"
/gene_synonym="MOP9"
/note="HLH; Region: Helix-loop-helix DNA-binding domain"
/db_xref="CDD:pfam00010"
misc_feature 367..555
/gene="ARNTL2"
/gene_synonym="BMAL2"
/gene_synonym="CLIF"
/gene_synonym="MOP9"
/note="PAS; Region: PAS domain"
/db_xref="CDD:smart00091"
misc_feature 934..1101
/gene="ARNTL2"
/gene_synonym="BMAL2"
/gene_synonym="CLIF"
/gene_synonym="MOP9"
/note="PAS; Region: PAS domain"
/db_xref="CDD:smart00091"
BASE COUNT 591 a 337 c 386 g 492 t
ORIGIN
1 ggtaaagtgt tgagagagga gaaccagtgc attgctcctg tggtttccag ccgcgtgagt
61 ccagggacaa gaccaacagc tatggggtct ttcagctcac acatgacaga gtttccacga
121 aaacgcaaag gaagtgattc agacccatcc caagaagctc atagccaaac tgaaaagcgg
181 aggagagata aaatgaataa cctgattgaa gaactgtctg caatgatccc tcagtgcaac
241 cccatggcgc gtaaactgga caaacttaca gttttaagaa tggctgttca acacttgaga
301 tctttaaaag gcttgacaaa ttcttatgtg ggaagtaatt atagaccatc atttcttcag
361 gataatgagc tcagacattt aatccttaag actgcagaag gcttcttatt tgtggttgga
421 tgtgaaagag gaaaaattct cttcgtttct aagtcagtct ccaaaatact taattatgat
481 caggctagtt tgactggaca aagcttattt gacttcttac atccaaaaga tgttgccaaa
541 gtaaaggaac aactttcttc ttttgatatt tcaccaagag aaaagctaat agatgccaaa
601 actggtttgc aagttcacag taatctccac gctggaagga cacgtgtgta ttctggctca
661 agacgatctt ttttctgtcg gataaagagt tgtaaaatct ctgtcaaaga agagcatgga
721 tgcttaccca actcaaagaa gaaagagcac agaaaattct atactatcca ttgcactggt
781 tacttgagaa gctggcctcc aaatattgtt ggaatggaag aagaaaggaa cagtaagaaa
841 gacaacagta attttacctg ccttgtggcc attggaagat tacagccata tattgttcca
901 cagaacagtg gagagattaa tgtgaaacca actgaattta taacccggtt tgcagtgaat
961 ggaaaatttg tctatgtaga tcaaagggca acagcgattt taggatatct gcctcaggaa
1021 cttttgggaa cttcttgtta tgaatatttt catcaagatg accacaataa tttgactgac
1081 aagcacaaag cagttctaca gagtaaggag aaaatactta cagattccta caaattcaga
1141 gcaaaagatg gctcttttgt aactttaaaa agccaatggt ttagtttcac aaatccttgg
1201 acaaaagaac tggaatatat tgtatctgtc aacactttag ttttgggaca tagtgagcct
1261 ggagaagcat catttttacc ttgtagctct caatcatcag aagaatcctc tagacagtcc
1321 tgtatgagtg tacctggaat gtctactgga acagtacttg gtgctggtag tattggaaca
1381 gatattgcaa atgaaattct ggatttacag aggttacagt cttcttcata ccttgatgat
1441 tcgagtccaa caggtttaat gaaagatact catactgtaa actgcaggag tatgtcaaat
1501 aaggagttgt ttccaccaag tccttctgaa atgggggagc tagaggctac caggcaaaac
1561 cagagtactg ttgctgtcca cagccatgag ccactcctca gtgatggtgc acagttggat
1621 ttcgatgccc tatgtgacaa tgatgacaca gccatggctg catttatgaa ttacttagaa
1681 gcagaggggg gcctgggaga ccctggggac ttcagtgaca tccagtggac cctctagcct
1741 ttgattttta actccaaaaa tgagaaacat tttaaagcat ttcatttacg aaaaaaaaaa
1801 aaaaaa
//