LOCUS BC000124 2735 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens sideroflexin 3, mRNA (cDNA clone MGC:3122
IMAGE:3352015), complete cds.
ACCESSION BC000124
VERSION BC000124.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2735)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2735)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 6 Row: k Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 49472836.
FEATURES Location/Qualifiers
source 1..2735
/db_xref="H-InvDB:HIT000029364"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3122 IMAGE:3352015"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2735
/gene="SFXN3"
/gene_synonym="BA108L7.2"
/gene_synonym="SFX3"
/db_xref="GeneID:81855"
/db_xref="HGNC:HGNC:16087"
CDS 63..1040
/gene="SFXN3"
/gene_synonym="BA108L7.2"
/gene_synonym="SFX3"
/codon_start=1
/product="sideroflexin 3"
/protein_id="AAH00124.2"
/db_xref="GeneID:81855"
/db_xref="HGNC:HGNC:16087"
/translation="MESKMGELPLDINIQEPRWDQSTFLGRARHFFTVTDPRNLLLSG
AQLEASRNIVQNYRAGVVTPGITEDQLWRAKYVYDSAFHPDTGEKVVLIGRMSAQVPM
NMTITGCMLTFYRKTPTVVFWQWVNQSFNAIVNYSNRSGDTPITVRQLGTAYVSATTG
AVATALGLKSLTKHLPPLVGRFVPFAAVAAANCINIPLMRQRELQVGIPVADEAGQRL
GYSVTAAKQGIFQVVISRICMAIPAMAIPPLIMDTLEKKDFLKRRPWLGAPLQVGLVG
FCLVFATPLCCALFPQKSSIHISNLEPELRAQIHEQNPSVEVVYYNKGL"
BASE COUNT 645 a 757 c 695 g 638 t
ORIGIN
1 ggagggcccg gcggcgacag cggaggcaga gaggaaggcg gttctgagag cttcagagag
61 cgatggaaag caaaatgggt gaattgcctt tagacatcaa catccaggaa cctcgctggg
121 accaaagtac tttcctgggc agagcccggc actttttcac tgttactgat cctcgaaatc
181 tgctgctgtc cggggcacag ctggaagctt ctcggaacat cgtgcagaac tacagggccg
241 gcgtggtgac cccagggatc accgaggacc agctgtggag ggccaagtat gtgtatgact
301 ccgccttcca tccggacaca ggggagaagg tggtcctgat tggccgcatg tcagcccagg
361 tgcccatgaa catgaccatc actggctgca tgctcacatt ctacaggaag accccaaccg
421 tggtgttctg gcagtgggtg aatcagtcct tcaatgccat tgttaactac tccaaccgca
481 gtggtgacac tcccatcact gtgaggcagc tggggacagc ctatgtgagt gccaccactg
541 gagctgtggc cacggccctg ggactcaaat ccctcaccaa gcacctgccc cccttggtcg
601 gcagatttgt gccctttgca gcagtggcag ctgccaactg catcaacatc cccctgatga
661 ggcagagaga gctgcaggtg ggcatcccgg tggctgatga ggcaggtcag aggcttggct
721 actcggtgac tgcagccaag cagggaatct tccaggtggt gatttcaaga atctgcatgg
781 cgattcctgc catggccatc ccaccactga tcatggacac tctggagaag aaagacttcc
841 tgaagcgccg cccctggctg ggggcacccc tgcaggtggg actggtgggc ttctgcctgg
901 tatttgcaac ccccctgtgc tgtgccctat tcccccagaa gagctccata cacataagca
961 acctggaacc agagctgaga gctcagatcc atgagcaaaa ccccagcgtt gaagtggtct
1021 actacaacaa ggggctttga ggagggtcag cctctgtccc ctccctcact tccttgggct
1081 gctgctttag tggagtcatg tcacccctac cacttggcta tctgcctagc actgggcagg
1141 ggccttggtg ggcagatggc aattgagggt agcaacctat tagggtgggg gagggacctc
1201 cataaggctt ttcctccctt ctctggtttc aaagatcaga gcacataacc cctcctgtgc
1261 ttgagtgtcc atgcatatac atacatgata cacatgtgta tgtgtacatt gggtcctgaa
1321 agctagaagc aggcatgcta gcctagtatg ttctgacatc tggcttccct tctcagcctc
1381 atgtccacct gcctgccagc caggctacag gtgtgacttc cttctctaaa ctgttacacc
1441 agccaagtta tttttgatgg cacctcatcc cttctagaaa taggaggagc cccaggatct
1501 caggacagag acttatagac actagtagga caaagcgggc tgaatccttc aggtttctga
1561 tacctagctc cccaagctga ctgggctggc agaggagaac atgttgagac aagggaggca
1621 ggggacttat gcatccctca gtgccatccc ttgtatcctg gaatagctcc atttcccctc
1681 ctcctctcta ccagacaaag gagtgcctgt gtcctgtact gccctcgctg tctcccccac
1741 caccctactt gacagcgtgg gcatcttcag gcacagcctt gggagttcct ggtgtgctct
1801 gacatcatga cctcaaatct aaatcctcca atcccaactc cctttcccaa acaaaaagcc
1861 acagaggcag agcaagcatt cccctttaag agcttccact gcaccccctc ccaagggaca
1921 cagcggtagg aatggtgctt aaactccaca ggtatcagag agggtgtaac taggacatcc
1981 tcaagggcag ctaggccccg aatgtacaat gttaagacag ggaattttgt gttccattga
2041 cttttttttt tttttttaat ggagtttcac tattttgccc aggctggagt gcgatggtgc
2101 gatcttggct cactgcaacc tctgcctcct gggttcaagt gattctcttg cctcagtctc
2161 ccgagtagtg gaaattacag gtgtgtgcta ccacatcttg ctagttttgt atttttagca
2221 gagatggggg tttcaccatg ttggccaggc tagtctcgaa ctcctgacct caggtgatcc
2281 acctgccttg gcctcccaaa gcactgggat tacaagcatg agccactgtg cccagcctgt
2341 tccactgaca tttcttagac attcagcaaa acccccacct taacctcttt tctttcttga
2401 gggttggtcc tgtccccacc tccaccctcc caccccctgg aagaggaagg gcccgggcat
2461 cagtggctag tccaaataaa atatgggctt ggggatggaa tgggtggtgg taagttcaca
2521 gagtgtagtt agatcccaac tcccatgacc tctggcttca gtggtgggtg gggcagggca
2581 gatgaaaggg cttcagtggg aacctctgag agcattttcc tgttccccct atcaaccgcc
2641 cccagtgata acatctgtga agccagccat tactcaataa actgcaaact tgtctaaaaa
2701 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
//