LOCUS BC000078 1248 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens collectin sub-family member 11, mRNA (cDNA clone
MGC:3279 IMAGE:3507377), complete cds.
ACCESSION BC000078
VERSION BC000078.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1248)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1248)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 20, 2003 this sequence version replaced BC000078.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 7 Row: g Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40548418.
FEATURES Location/Qualifiers
source 1..1248
/db_xref="H-InvDB:HIT000029327"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3279 IMAGE:3507377"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1248
/gene="COLEC11"
/gene_synonym="MGC3279"
/db_xref="GeneID:78989"
/db_xref="HGNC:HGNC:17213"
CDS 74..889
/gene="COLEC11"
/gene_synonym="MGC3279"
/codon_start=1
/product="collectin sub-family member 11"
/protein_id="AAH00078.1"
/db_xref="GeneID:78989"
/db_xref="HGNC:HGNC:17213"
/translation="MRGNLALVGVLISLAFLSLLPSGHPQPAGDDACSVQILVPGLKG
DAGEKGDKGAPGRPGRVGPTGEKGDMGDKGQKGSVGRHGKIGPIGSKGEKGDSGDIGP
PGPNGEPGLPCECSQLRKAIGEMDNQVSQLTSELKFIKNAVAGVRETESKIYLLVKEE
KRYADAQLSCQGRGGTLSMPKDEAANGLMAAYLAQAGLARVFIGINDLEKEGAFVYSD
HSPMRTFNKWRSGEPNNAYDEEDCVEMVASGGWNDVACHTTMYFMCEFDKENM"
BASE COUNT 304 a 322 c 390 g 232 t
ORIGIN
1 cgggccagcg acgggcagga cgccccgttc gcctagcgcg tgctcaggag ttggtgtcct
61 gcctgcgctc aggatgaggg ggaatctggc cctggtgggc gttctaatca gcctggcctt
121 cctgtcactg ctgccatctg gacatcctca gccggctggc gatgacgcct gctctgtgca
181 gatcctcgtc cctggcctca aaggggatgc gggagagaag ggagacaaag gcgcccccgg
241 acggcctgga agagtcggcc ccacgggaga aaaaggagac atgggggaca aaggacagaa
301 aggcagtgtg ggtcgtcatg gaaaaattgg tcccattggc tctaaaggtg agaaaggaga
361 ttccggtgac ataggacccc ctggtcctaa tggagaacca ggcctcccat gtgagtgcag
421 ccagctgcgc aaggccatcg gggagatgga caaccaggtc tctcagctga ccagcgagct
481 caagttcatc aagaatgctg tcgccggtgt gcgcgagacg gagagcaaga tctacctgct
541 ggtgaaggag gagaagcgct acgcggacgc ccagctgtcc tgccagggcc gcgggggcac
601 gctgagcatg cccaaggacg aggctgccaa tggcctgatg gccgcatacc tggcgcaagc
661 cggcctggcc cgtgtcttca tcggcatcaa cgacctggag aaggagggcg ccttcgtgta
721 ctctgaccac tcccccatgc ggaccttcaa caagtggcgc agcggtgagc ccaacaatgc
781 ctacgacgag gaggactgcg tggagatggt ggcctcgggc ggctggaacg acgtggcctg
841 ccacaccacc atgtacttca tgtgtgagtt tgacaaggag aacatgtgag cctcaggctg
901 gggctgccca ttgggggccc cacatgtccc tgcagggttg gcagggacag agcccagacc
961 atggtgccag ccagggagct gtccctctgt gaagggtgga ggctcactga gtagagggct
1021 gttgtctaaa ctgagaaaat ggcctatgct taagaggaaa atgaaagtgt tcctggggtg
1081 ctgtctctga agaagcagag tttcattacc tgtattgtag ccccaatgtc attatgtaat
1141 tattacccag aattgctctt ccataaagct tgtgcctttg tccaagctat acaataaaat
1201 ctttaagtag tgcagtaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa
//