LOCUS AK071926 3448 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013072F24, full insert
sequence.
ACCESSION AK071926
VERSION AK071926.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3448)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001)
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3448
/clone="J013072F24"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 146..3247
/db_xref="Osa1:LOC_Os12g18360"
/db_xref="RAP-DB:Os12g0281300"
/note="(RAP Annotation release2) Similar to Pi-ta protein"
/note="(Rice Genome Annotation Project) RGH2A, putative,
expressed"
/note="mapping to R12-TIGRv4S1-000392R (Chr.12: short
arm=10603771, long arm=10609327, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG92756.1"
/translation="MAPAVSASQGVIMRSLTSKLDSLLLQPPEPPPPAQPSSLRKGER
KKILLLRGDLRHLLDDYYLLVEPPSDTAPPPDSTAACWAKEVRELSYDVDDFLDELTT
QLLHHRGGGDGSSTAGAKKMISSMIARLRGELNRRRWIADEVTLFSARVKEAIRRQES
YHLGRRTSSSRPREEVDDDDREDSAGNERRRFLSLTFGMDDAAVHGQLVGRDISMQKL
VRWLADGEPKLKVASIVGSGGVGKTTLATEFYRLHGRRLDAPFDCRAFVRTPRKPDMT
KILTDMLSQLRPQHQHQSSDVWEVDRLLETIRTHLQDKRYFIIIEDLWASSMWDIVSR
GLPDNNSCSRILITTEIEPVALACCGYNSEHIIKIDPLGDDVSSQLFFSGVVGQGNEF
PGHLTEVSHDMIKKCGGLPLAITITARHFKSQLLDGMQQWNHIQKSLTTSNLKKNPTL
QGMRQVLNLIYNNLPHCLKACLLYLSIYKEDYIIRKANLVRQWMAEGFINSIENKVME
EVAGNYFDELVGRGLVQPVDVNCKNEVLSCVVHHMVLNFIRCKSIEENFSITLDHSQT
TVRHADKVRRLSLHFSNAHDTTPLAGLRLSQVRSMAFFGQVKCMPSIADYRLLRVLIL
CFWADQEKTSYDLTSISELLQLRYLKITGNITVKLPEKIQGLQHLQTLEADARATAVL
LDIVHTQCLLHLRLVLLDLLPHCHRYIFTSIPKWTGKLNNLRILNIAVMQISQDDLDT
LKGLGSLTALSLLVRTAPAQRIVAANEGFGSLKYFMFVCTAPCMTFVEGAMPSVQRLN
LRFNANEFKQYDSKETGLEHLVALAEISARIGGTDDDESNKTEVESALRTAIRKHPTP
STLMVDIQWVDWIFGAEGRDLDEDLAQQDDHGFCMLPESSSRLQSREISIEEDMPTGA
EGTVIVPHTMEQFALHMSQAKQSHKLVVIQFTTSRCPASRYIAPAFTEYAKEFAGAVF
IKVNVDSDELESVTDWYDIEGIVPTFFFVKDGEKIDKIPGANKELLRAKIRRHTASPY
FLR"
BASE COUNT 898 a 799 c 869 g 882 t
ORIGIN
1 gagataggat taagtttcaa gagttaattt cttgtactct tgggcgatcc atgctgtcaa
61 atcagcaact aacgaggcat aatctcgatc actagctctg atctgatctt cagctagcgc
121 cggcgagctg cagaggtctc catccatggc gccggcggtc agtgcatcgc agggtgtcat
181 catgcggtcc ctgacgagca agctcgactc gctgctgctg cagccgccgg agccgccgcc
241 gcctgcgcaa ccgtcgtcgc tgcggaaggg ggagaggaag aagatcctcc tcctcagagg
301 cgatctccga cacctgctag atgactacta cctcctcgtg gagccgccgt cagacaccgc
361 gccaccgcca gactcgacgg cggcgtgctg ggctaaggag gttcgcgagc tctcctacga
421 cgtcgacgac ttcctcgacg agctaacgac ccagctcctc caccaccgcg gcggcggcga
481 tggcagtagc actgctggtg ccaagaagat gatcagcagc atgatcgccc ggcttcgagg
541 ggagcttaac cggcggcggt ggatcgccga cgaggtcacc ctgttcagcg cccgcgtgaa
601 ggaggccatt cgccgccagg agagctacca tcttggcagg cgcacctcga gctcgaggcc
661 gagagaagaa gtcgacgacg acgatcgcga ggactccgcc ggcaacgaac gccgccggtt
721 tctgtcgctg acgttcggga tggacgacgc tgctgtgcac ggccagctcg ttggtaggga
781 tatttcgatg caaaagctcg tccggtggct ggccgacggc gagccgaagc tcaaggtggc
841 ttccattgtt ggatccggag gtgttggcaa gacgacgctg gccacagaat tctatcgtct
901 gcatggccgg cggttggatg cgccgttcga ctgccgggct ttcgtgcgga cgccccggaa
961 gcctgacatg acgaagatcc tcaccgacat gctgtcacag ctgcggccac aacatcagca
1021 tcagtcttcg gatgtttggg aggttgatcg actccttgaa actatccgga cgcatttgca
1081 agataaaagg tacttcatca taattgaaga tttatgggct tcatcaatgt gggatattgt
1141 tagccgtggt ttgcctgata ataatagttg cagtagaata ctaataacaa cagaaattga
1201 acctgtagct ttggcatgct gtggatataa ctcagagcac attattaaga ttgatccact
1261 gggtgatgat gtctcaagtc aattgttttt cagtggagtt gttggccaag gaaatgaatt
1321 tcctggacat cttactgaag tttctcatga catgataaaa aaatgtggtg gcttgccact
1381 agcaataact ataacagcca gacattttaa aagccagctg ttagatggaa tgcagcaatg
1441 gaatcacata caaaaatcat tgactacttc caatttgaag aaaaatccta ctttgcaggg
1501 gatgaggcaa gtactcaacc ttatttacaa taatcttcct cattgtttga aagcatgtct
1561 gttatacctt agcatctaca aagaggacta cataattagg aaggccaact tggtgaggca
1621 atggatggct gaaggtttca tcaattccat agaaaataaa gtcatggaag aagttgcagg
1681 gaactatttt gatgaacttg ttggtagggg cctggtccaa ccagtagatg ttaactgcaa
1741 aaatgaggta ttgtcatgtg tagtgcacca catggtatta aatttcatca ggtgtaagtc
1801 aatagaggag aatttcagca ttacattgga tcattctcag acgacagtaa gacatgctga
1861 caaggttcgc cgactctcgc ttcacttcag caatgcacat gatacaacac cactagcagg
1921 tttgagactc tcacaagttc gatcgatggc atttttcgga caagtcaagt gtatgccttc
1981 cattgcagat tataggcttc ttcgagttct gattctttgt ttttgggctg atcaagagaa
2041 aacaagctat gacctcacaa gcatttctga actgttacaa ctgagatatc tgaagataac
2101 aggtaatatc acagttaaac ttccagagaa gatccaagga ctacaacact tgcagacact
2161 ggaagcagat gcaagagcaa ctgctgtcct attggatatt gttcatacac agtgtttgtt
2221 gcaccttcgt cttgtactac ttgatctgct ccctcactgt cacaggtaca tcttcaccag
2281 catccccaaa tggactggaa agctcaacaa tctccgcatt ttaaacattg cagtcatgca
2341 aatttcccag gatgaccttg acactctcaa aggactggga tctctcactg ctctttcgct
2401 gcttgttcga acagcgcctg cgcaaagaat cgtcgctgcg aatgaggggt tcgggtctct
2461 caagtacttc atgtttgtct gtacagcacc atgcatgact tttgtggaag gagcaatgcc
2521 gagtgtgcaa agattaaatc taaggttcaa tgccaacgag ttcaagcagt atgactctaa
2581 ggagacaggg ttggaacact tggtcgccct tgcagagatc tctgcaagaa ttgggggcac
2641 tgatgatgat gaatcaaaca aaactgaagt ggagtctgcc ttgaggactg caattcgcaa
2701 gcatccgacg ccgagcactc ttatggttga tatacaatgg gtggattgga tctttggtgc
2761 tgaagggaga gacttggatg aagatttggc acaacaagat gatcacgggt tttgtatgct
2821 accggaatcc tcttcacgtc ttcagagtag agagataagt atcgaagaag acatgcccac
2881 cggtgcggaa gggacggtga ttgtgcccca cacaatggag cagttcgccc tccacatgag
2941 ccaagccaag caatcccaca agctcgtagt catccagttc actacttccc ggtgccctgc
3001 ttcacgctac atcgcgccag ctttcaccga gtatgcgaag gagttcgctg gtgcggtttt
3061 cattaaggtc aatgtcgaca gcgatgagct ggagagtgtt acggactggt atgacatcga
3121 agggatagtg ccaacatttt tcttcgtcaa ggatggggag aagattgaca agattcctgg
3181 tgctaacaag gagttgctcc gagccaaaat tcgaaggcac acagcttctc cttacttcct
3241 ccgttgataa tgacttcttt tatcgtcttt gtctagtata tatatggcac ttatatagtt
3301 aactaggaag ggcaccttgt ttaatgtagc tttcattttt attatgaatg ttaaggatga
3361 tattatattg ttgaagtatt tttttactcc ttgtaaacat gtattggtta ataacgaagt
3421 agtttggaca ttagttatga ttttcttc
//