LOCUS WQZ30466.1 1026 aa PRT BCT 29-DEC-2023
DEFINITION Helicobacter pylori efflux RND transporter permease subunit
HefC protein.
ACCESSION CP079244-580
PROTEIN_ID WQZ30466.1
SOURCE Helicobacter pylori
ORGANISM Helicobacter pylori
Bacteria; Campylobacterota; Epsilonproteobacteria;
Campylobacterales; Helicobacteraceae; Helicobacter.
REFERENCE 1 (bases 1 to 1570870)
AUTHORS Thorell,K., Munoz-Ramirez,Z.Y., Wang,D., Sandoval-Motta,S., Boscolo
Agostini,R., Ghirotto,S., Torres,R.C., Falush,D., Camargo,M.C. and
Rabkin,C.S.
CONSRTM HpGP Research Network
TITLE The Helicobacter pylori Genome Project: insights into H. pylori
population structure from analysis of a worldwide collection of
complete genomes
JOURNAL Nat Commun 14 (1), 8184 (2023)
PUBMED 38081806
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 1570870)
AUTHORS Camargo,M.C. and Rabkin,C.S.
TITLE Direct Submission
JOURNAL Submitted (15-JUL-2021) IIB, National Cancer Institute, 9609
Medical Center Dr., Rm. 6E110, Bethesda, MD 20892, USA
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: HGAP v. 4
Assembly Name :: HpGP-TWN-021
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 2661x
Sequencing Technology :: PacBio Sequel II
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 07/16/2021 08:12:09
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 5.2
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 1,497
CDSs (total) :: 1,452
Genes (coding) :: 1,391
CDSs (with protein) :: 1,391
Genes (RNA) :: 45
rRNAs :: 2, 2, 2 (5S, 16S, 23S)
complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)
tRNAs :: 36
ncRNAs :: 3
Pseudo Genes (total) :: 61
CDSs (without protein) :: 61
Pseudo Genes (ambiguous residues) :: 0 of 61
Pseudo Genes (frameshifted) :: 44 of 61
Pseudo Genes (incomplete) :: 11 of 61
Pseudo Genes (internal stop) :: 18 of 61
Pseudo Genes (multiple problems) :: 12 of 61
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Helicobacter pylori"
/mol_type="genomic DNA"
/strain="HpGP-TWN-021"
/isolation_source="Biopsy"
/host="Homo sapiens"
/db_xref="taxon:210"
/geo_loc_name="Taiwan"
/lat_lon="23.30 N 121.00 E"
/collected_by="Maria Camargo and Charles Rabkins"
protein /gene="hefC"
/locus_tag="E5P95_02970"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000278361.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MYKTAINRPI TTLMFALAIV FFGTMGFKKL SVALFPKIDL PTVVVTTTYP GASAEIIESK
61 VTDKIEEAVM GIDGIKKVTS TSSKNVSIVV IEFELEKPNE EALNDVVNKI SSVRFDDSNI
121 KKPSINKFDT DSQAIISLFV SSSSVPATTL NDYAKKTIKP MLQKIDGVGG VQLNGFRERQ
181 IRIYADPTLM NKYNLTYADL FSTLKAENVE IDGGRIVNSQ RELSILVNAN SYSVADVEKI
241 QVGNHVRLGD IAKIEIGLEE DNTFASFKDK PGVILEIQKI AGANEIEIVD RVYEALKHIQ
301 AISPNYEIRP FLDTTGYIRT SIEDVKFDLV LGAILAVLVV FAFLRNGTIT LVSAISIPIS
361 VMGTFALIQW MGFSLNMLTM VALTLAIGII IDDAIVVIEN IHKKLEMGMN KRKASYEGVR
421 EIGFALVAIS AMLLSVFVPI GNMKGIIGRF FQSFGITVAL AIALSYVVVV TIIPMVSSVV
481 VNPRHSRFYV WSEPFFKALE SRYTKLLQWV LNHKLIIFIA VVLVFVGSLF VASKLGMEFM
541 LKEDRGRFLV WLKAKPGVSI DYMTQRSKIF QKAIEKHAEV EFTTLQVGYG TTQNPFKAKI
601 FVQLKPLKER KKEHELGQFE LMSALRKELK SMPEAKGLEN INLSEVSLIG GGGDSSPFQT
661 FVFSHSQEAV DKSVANLKKF LLESPELKGK IEGYHTSTSE SQPQLQLKIL RQNANKYGVS
721 AQTIGSVVSS AFSGTSQASV FKEDGKEYDM IIRVPDNKRV SVEDIKRLQV RNKYDKLMFL
781 DALVEITETK SPSSISRYNR QRSVTVLAQP KAGISLGEIL TQVGKNAKEW LVEGANYRFT
841 GEADNAKETN GEFLIALATA FVLIYMILAA LYESILEPFI IMVTMPLSFS GAFFALGLVH
901 QPLSMFSMIG LILLIGMVGK NATLLIDVAN EERKKGLNIQ EAILFAGKTR LRPILMTTIA
961 MVCGMLPLAL ASGDGAAMKS PIGIAMSGGL MISMVLSLLI VPVFYRLLAP IDDKIKRFYQ
1021 NQKTLE
//