LOCUS       WQZ30466.1              1026 aa    PRT              BCT 29-DEC-2023
DEFINITION  Helicobacter pylori efflux RND transporter permease subunit
            HefC protein.
ACCESSION   CP079244-580
PROTEIN_ID  WQZ30466.1
SOURCE      Helicobacter pylori
  ORGANISM  Helicobacter pylori
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Helicobacteraceae; Helicobacter.
REFERENCE   1  (bases 1 to 1570870)
  AUTHORS   Thorell,K., Munoz-Ramirez,Z.Y., Wang,D., Sandoval-Motta,S., Boscolo
            Agostini,R., Ghirotto,S., Torres,R.C., Falush,D., Camargo,M.C. and
            Rabkin,C.S.
  CONSRTM   HpGP Research Network
  TITLE     The Helicobacter pylori Genome Project: insights into H. pylori
            population structure from analysis of a worldwide collection of
            complete genomes
  JOURNAL   Nat Commun 14 (1), 8184 (2023)
   PUBMED   38081806
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570870)
  AUTHORS   Camargo,M.C. and Rabkin,C.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2021) IIB, National Cancer Institute, 9609
            Medical Center Dr., Rm. 6E110, Bethesda, MD 20892, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 4
            Assembly Name          :: HpGP-TWN-021
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 2661x
            Sequencing Technology  :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 07/16/2021 08:12:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,497
            CDSs (total)                      :: 1,452
            Genes (coding)                    :: 1,391
            CDSs (with protein)               :: 1,391
            Genes (RNA)                       :: 45
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 44 of 61
            Pseudo Genes (incomplete)         :: 11 of 61
            Pseudo Genes (internal stop)      :: 18 of 61
            Pseudo Genes (multiple problems)  :: 12 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Helicobacter pylori"
                     /mol_type="genomic DNA"
                     /strain="HpGP-TWN-021"
                     /isolation_source="Biopsy"
                     /host="Homo sapiens"
                     /db_xref="taxon:210"
                     /geo_loc_name="Taiwan"
                     /lat_lon="23.30 N 121.00 E"
                     /collected_by="Maria Camargo and Charles Rabkins"
     protein         /gene="hefC"
                     /locus_tag="E5P95_02970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000278361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MYKTAINRPI TTLMFALAIV FFGTMGFKKL SVALFPKIDL PTVVVTTTYP GASAEIIESK
       61 VTDKIEEAVM GIDGIKKVTS TSSKNVSIVV IEFELEKPNE EALNDVVNKI SSVRFDDSNI
      121 KKPSINKFDT DSQAIISLFV SSSSVPATTL NDYAKKTIKP MLQKIDGVGG VQLNGFRERQ
      181 IRIYADPTLM NKYNLTYADL FSTLKAENVE IDGGRIVNSQ RELSILVNAN SYSVADVEKI
      241 QVGNHVRLGD IAKIEIGLEE DNTFASFKDK PGVILEIQKI AGANEIEIVD RVYEALKHIQ
      301 AISPNYEIRP FLDTTGYIRT SIEDVKFDLV LGAILAVLVV FAFLRNGTIT LVSAISIPIS
      361 VMGTFALIQW MGFSLNMLTM VALTLAIGII IDDAIVVIEN IHKKLEMGMN KRKASYEGVR
      421 EIGFALVAIS AMLLSVFVPI GNMKGIIGRF FQSFGITVAL AIALSYVVVV TIIPMVSSVV
      481 VNPRHSRFYV WSEPFFKALE SRYTKLLQWV LNHKLIIFIA VVLVFVGSLF VASKLGMEFM
      541 LKEDRGRFLV WLKAKPGVSI DYMTQRSKIF QKAIEKHAEV EFTTLQVGYG TTQNPFKAKI
      601 FVQLKPLKER KKEHELGQFE LMSALRKELK SMPEAKGLEN INLSEVSLIG GGGDSSPFQT
      661 FVFSHSQEAV DKSVANLKKF LLESPELKGK IEGYHTSTSE SQPQLQLKIL RQNANKYGVS
      721 AQTIGSVVSS AFSGTSQASV FKEDGKEYDM IIRVPDNKRV SVEDIKRLQV RNKYDKLMFL
      781 DALVEITETK SPSSISRYNR QRSVTVLAQP KAGISLGEIL TQVGKNAKEW LVEGANYRFT
      841 GEADNAKETN GEFLIALATA FVLIYMILAA LYESILEPFI IMVTMPLSFS GAFFALGLVH
      901 QPLSMFSMIG LILLIGMVGK NATLLIDVAN EERKKGLNIQ EAILFAGKTR LRPILMTTIA
      961 MVCGMLPLAL ASGDGAAMKS PIGIAMSGGL MISMVLSLLI VPVFYRLLAP IDDKIKRFYQ
     1021 NQKTLE
//