LOCUS WKY05663.1 5208 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-2487
PROTEIN_ID WKY05663.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_006118"
/note="NIPPO_CHRIV.G9958.T3"
intron_pos 47:0 (1/76)
intron_pos 105:1 (2/76)
intron_pos 136:0 (3/76)
intron_pos 210:0 (4/76)
intron_pos 283:0 (5/76)
intron_pos 430:0 (6/76)
intron_pos 503:0 (7/76)
intron_pos 576:0 (8/76)
intron_pos 649:0 (9/76)
intron_pos 722:0 (10/76)
intron_pos 795:0 (11/76)
intron_pos 868:0 (12/76)
intron_pos 941:0 (13/76)
intron_pos 957:0 (14/76)
intron_pos 1001:0 (15/76)
intron_pos 1074:0 (16/76)
intron_pos 1147:0 (17/76)
intron_pos 1220:0 (18/76)
intron_pos 1293:0 (19/76)
intron_pos 1366:0 (20/76)
intron_pos 1439:0 (21/76)
intron_pos 1487:0 (22/76)
intron_pos 1560:0 (23/76)
intron_pos 1635:0 (24/76)
intron_pos 1710:0 (25/76)
intron_pos 1783:0 (26/76)
intron_pos 1856:0 (27/76)
intron_pos 1929:0 (28/76)
intron_pos 2002:0 (29/76)
intron_pos 2075:0 (30/76)
intron_pos 2148:0 (31/76)
intron_pos 2221:0 (32/76)
intron_pos 2294:0 (33/76)
intron_pos 2367:0 (34/76)
intron_pos 2444:0 (35/76)
intron_pos 2516:0 (36/76)
intron_pos 2592:0 (37/76)
intron_pos 2697:0 (38/76)
intron_pos 2753:0 (39/76)
intron_pos 2812:0 (40/76)
intron_pos 2888:0 (41/76)
intron_pos 2960:0 (42/76)
intron_pos 3032:0 (43/76)
intron_pos 3104:0 (44/76)
intron_pos 3176:0 (45/76)
intron_pos 3248:0 (46/76)
intron_pos 3320:0 (47/76)
intron_pos 3392:0 (48/76)
intron_pos 3464:0 (49/76)
intron_pos 3536:0 (50/76)
intron_pos 3608:0 (51/76)
intron_pos 3680:0 (52/76)
intron_pos 3752:0 (53/76)
intron_pos 3824:0 (54/76)
intron_pos 3896:0 (55/76)
intron_pos 3968:0 (56/76)
intron_pos 4040:0 (57/76)
intron_pos 4103:0 (58/76)
intron_pos 4166:0 (59/76)
intron_pos 4277:0 (60/76)
intron_pos 4343:0 (61/76)
intron_pos 4469:0 (62/76)
intron_pos 4595:0 (63/76)
intron_pos 4649:0 (64/76)
intron_pos 4776:0 (65/76)
intron_pos 4830:0 (66/76)
intron_pos 4875:0 (67/76)
intron_pos 4936:2 (68/76)
intron_pos 4987:0 (69/76)
intron_pos 5019:0 (70/76)
intron_pos 5043:1 (71/76)
intron_pos 5063:1 (72/76)
intron_pos 5093:0 (73/76)
intron_pos 5121:2 (74/76)
intron_pos 5158:2 (75/76)
intron_pos 5180:0 (76/76)
BEGIN
1 MAKRDRLQET TIPQQEAVVE IVDSKREVKR KTDTDRVTTT DSLIEQDIVK RTEVRNNQMK
61 ERITWTTRER IVETTDELVA NAPGPRRSGQ SLTWMGKRQE VNDKGLSSAP SRSDTPLTSK
121 GNSQTTPDPN TLTGEKANSK HQDEKVHGQM KVPEAANERE RSFKGKEEKD ITRVDLPSRV
181 HQASNRDSDK PLARNASQTI SEPNSLLDQS ASRRHKDAKV ERKKAVPRKV AESERRAKGE
241 RIALSQYDLP SGLKSASNTD FDGPLERDIS GTNSEPNSLH EQGESRRHED AKGPKQKEGP
301 RKAPDRDRRT KGERITRAQY DLPPGLQSAS NTEFDSPLAK DISETNSEPN SLLEQVAVFQ
361 QALLKRIFHG TSPHNGNIKE IQRAKGTRTT RKQIDLPPGL KNQPNTDRDE PFARDILRVN
421 SEPNSLHEQS SSRNHKDAKV ERKKEVPRKV AESERSAKVE RITRTQYDLP PGLNNASSTD
481 IDGAFARDIS RTDTEPNSLR EQSVGRKHKD AKVERKKEVP RKVAESERSA KVERITRTQY
541 DLPPGLNNAS STDIDGPFAR DISRTDTEPN SLREQSVGRK HKDAKVERKK EVPRKVAESE
601 RSAKVERITR TQYDLPPGLN NASSTDIDGP FARDISRTDT EPNSLREQSV DRRHRDAKVE
661 RKKEVPRKVS ESERSAKVER ITRTQYDLPP GLNNASSTDI DGPFARDISR TDTEPNSLRE
721 QSAGRRRRDA KVERKKEVPR KVSESERSAK VERITRTQYD LPTGLNNASK VETDGPVAGD
781 TSRANTEPNS LREQSVGRKH KDAKVERKKE VPRKVAESER SAKVERITRT QYDLPPGLNN
841 ASSTDIDGPF ARDISRTDTE PNSLREQSVG GKHKVAKVER KKEVTRKVAK SERNAKVERI
901 TKTQYDLPPG LNNASSTDFD GPVAGDTSRA NTEPNSLREQ SVGGKHKVAK VERKKEVERI
961 TKTQYDLPPG LNNASSTDFD GPVAGDTSRA NTEPNSLREQ SVGGKHKVAK VERKKEVTRK
1021 VAKSERSAKV GRITKTQYDL PPGLNNASST DFDGPVAGDT SRANTEPNSL REQSVGGKHK
1081 VAKVERKKEV TRKVAKSERN AKVERITRTQ YDLPPGLNNA SSTDIDGPFA RDISRTDTEP
1141 NSLREQSVGR KHKDAKVERK KEVPRKVSER ERSAKVERIT KTQHDLPPGL NNASRTDIDG
1201 QFARDISRTD TEPNSLREQS VGRKHKDAKV ESKKEVPRKV SESERSAKVE RITRTQYDLP
1261 PGLNNASSTD IDGPFARDIS RTDTEPNSLR EQSAGRRRRD AKVERKKEVP RKVSESERSA
1321 KVERITRTQY DLPPGLNNAS NVETDGPVAG DTSRANTEPN SLREQSVGRK HKDAKVERKK
1381 EVPRKVSERE RSAKVERITK TQHDLPPGLN NASSTDIDGP FARDISRTDT EPNSLREQGI
1441 GRRKMKSAQH NLTSRKTSNA SNTGFEITLP KDTSTVDPEP NTLINQSVKR RHEKRSKPVE
1501 LQKESDSESV DKKRKTKAFT NVLYGLPYGL ICVSNWAIER TLERDNSGTR SEPNSLIGQS
1561 VGRRLKNGKD RKHQNQPRKA QENEGISKGK RTTTAFTNSQ HDLPFGMKNT PERLHEKLLA
1621 RDTSLSEPNS LLNQNVDQGH MDKKDRKQKK KNRKALKIVK AAKEKRTTKV FMNVQHDLPS
1681 GLKNTSERDF KKSWDASETL SEPNSLANQS VSRKRDSEKR PEEVHREEPE SKRSAKERRT
1741 SKAFLNVQHD LPSGLKNASE RDFRKSMDVS ETLCEPNYLA NQSVSRKRDS EKGPEEVHRE
1801 EPESKRSAKE RRTSKAFLNV QHDLPSGLKN ASERDFRKSM DVSETLSEPN YLANQSVSRK
1861 RDSEKRPEEV HREEPESKRS AKERRTSKAF LNVQHDLPFG LKNASERDFR KSMDVSETLS
1921 EPNYLANQSV SRKRDSEKRP EEVHMEEPES KRSAKERHTS KAFLNVQHDL PFGLKNASER
1981 DFRKSMDVSE TLSEPNYLAN QSVSRKRDSE KGPEEVHREE PESKRSAKER RTSKAFLNVQ
2041 HDLPSGLKNA SERDFRKSMD VSETLSESNY LANQSVSRKR DSEKRPEEVH REEPESKRSA
2101 KERRTSKAFL NVQHDLPFGL KNASERDFRK SMDVSETLSE PNYLANQSVS RKRDSEKRPE
2161 EVHREEPESK RSAKERRTSK AFLNVQHDLP FGLKNASERD FRKSMDVSET LSEPNYLANQ
2221 SVSRKRDSEK RPEEVHREEP ESRRSAKERR TSKAFLNVQH DLPFGLKNAS ERDFRKSMDV
2281 SETLSEPNYL ANQSVSRKRD SEKRPEEVHR EEPESKRSAK ERRTSKAFLN AQHDLPSGLK
2341 NASERDFKKS MDASETLSEP NYLDNQSTSK RPKTEHGEMQ QNVSREARES GRIAKGKPSP
2401 KVFMNLQHDL PPGLNNASKK DFERPFAKES SEKLPETNSL RCQSLSRRHK DEKGRKQQEL
2461 LEIASISHRK ADEMNTMKPF ENAQHDLPRG LVDASKTEFK CVSGENPEPN YLTPQAFSAE
2521 HNKWKDETQK TVLPENKGRT TEKHSAMALT NVQHDLHHAP TLSSVPSTKS KMTLQEDRVE
2581 KLPDPSNIMD KSVCLKPEKA KEEPCKELNS VSTAKEKCVS TVCRSSRDEH AWVGQRFEEG
2641 KREVATKAEP KSVAENGTAA PPQDTDLKTA MNVLVETETA KADTDRVTTT DSLIENKMVK
2701 TTEVIGNQTR ERITWTIRKR IVERTDEWKR EPGTPGPRKS GQSITWKGKR KEKLLNKEEL
2761 AKSSAEKKLS DVPSNLKRNL LFEPPPNMDF GTPLPNDSSA ASSQPNSSIV QSVSSTHEHV
2821 RGPIQKEKPG QRPDNVDVSG KRTKSVLTNV LYGLPIGLKK ATNWVMERPL AKGSSRTESE
2881 PNSLLSQSVS RRHKDAEVLI QKEKPRNMPE SEGAREKKTT ETFMSVQHDL PSGLEDACRR
2941 VFENQPSGTN SEPNCLLGQS VSGGHKDAEI PIQKEEPRRV PENEDEKEIA TTKTLMSIQH
3001 DLPSGLEDAC RRVSENQPSG TNSEPNYLLG QSVTRRHKDA EIPIQKEEPR HVPESEDAKE
3061 KPTTRTLMSI QHDLPIGLEN ASKRVFENQP SGTSSEPNSL LGQSISRRHK DAEVSIEKEE
3121 PRIVPESEDA KKKPTSKAFM SVQHDLPIGL ENASKRVFEN QPSGTSSEPN SLLGQTVSRR
3181 HKDAEIPIQK EEPRVVHERE DAKKKPTSKA FMSVQHDLPI GLENASKRVF ENQPSGTSSE
3241 PNSLLGQTVS RRHKDAEIPI QKEEPRDVHE REGVKEKPTK KTFMSVQHDL PSGLENASKR
3301 VFENQPSGTS SEPNSLLGQT VSRRHKDAEI PIQKEEPRDV HEREDAKKKP TSKAFMSVQH
3361 DLPIGLENAS KRVFENQPSG TSSEPNSLLG QTVSRRHKDA EIPIQKEEPR DVHEREGVKE
3421 KPTKKTFMSV QHDLPSGLEN ASRRIFENQS SGTIFEPNSL LGQSISRRHK DAEVSIEKEE
3481 PRIVPESEDA KKKPTSKAFM SVQHDLPIGL ENASKRVFEN QPSGTSSEPN SLLGQSISRR
3541 HKDAEVSIEK EEPRIVPERE GVKEKPTTKT FMNVQHDLPI GLENASKRVF ENQPSGTSSE
3601 PNSLLGQSIS RRHKDAEVSI EKEEPRIVPE REGVKEKPTT KTFMNVQHDL PSGLENASRR
3661 IFENQSSGTI FEPNSLLGQS ISRRHKDAEI PIQKEEPRIV PEREGVKEKP TTKTFMNVQH
3721 DLPSGLENAS RRIFENQSSG TNSEPNSLLG QSISRRHKDA EVSIEKEEPR IVPEREGVKE
3781 KPTTKTFMNV QHDLPIGLEN ASKRVFENQP SGTSSEPNSL LGQTVSRRHK DAEIPIQKEE
3841 PRDVHEREDA KKKPTSKAFM SVQHDLPIGL ENASKRVFEN QPSGTSSEPN SLLGQSISRR
3901 HKGAEVSIEK EEPRIVPESE GVKEKPTKKT FMSVQHDLPS GLENASRRIF ENQSSGTISE
3961 PNSLLGQSIS RRHKDAEVSI EKEEPRIVPE REGVKEKPTT KTFMNVQHDL PIGLENASKR
4021 VFENQPSGTS SEPNSLLGQS ISRRYKDAEV PIEKEESKEK PTTKTFMNVQ HDLPIGLENA
4081 SRRVFENRSS GTNSEPNSLL GQSMSRRHKD AEVSIEKEEP KEKPTTKTFM NVQHDLPFGM
4141 ENASKRVFEN QSTGANSEPN SLFGQNVTPQ RLAHDNSDRS QRGKIVPLLL LPLYVKHGLR
4201 RTAEPAESEG SVVHGEHKCE QDIDPERGRE RRRTDDKRET LKRKQYNLPS GFASTSRCCK
4261 KSTSGRHSDP NSLTKQSVNG KKDVVNNHLE KREKSTLIGN KQLKERPKQT DLPTGIAGRH
4321 NGTEYRDRPS ECNSLTEQIN NRRPDKKRDE GTLQYKDRRK EHKKRKRPSV TCCRKRRAMK
4381 RAQREGQDLS RKEKFKETGG RRKNKKERHR SPRRAKDRSS RGTNDRYVPM SNAPSEQPDQ
4441 PPRTASASRR SEPLSAKTPD EPNSLLEQNL DNEGDVAAPQ RDEEPHMEHT KKNGPSLSCC
4501 CKRRATRRIA IRAGKEGKDI DTREGRGAMN RPPKSDDSSR REPSDKSRQK SKSSKNEEQN
4561 LPPGIASASR RGYKEALSRK GSKTPSEPNS LLEQKLHINP ELAAIPHKEK RLKKHKEHKK
4621 NGRLSLSCCC RRRRARRAAI RAGKETQESL DKQPEEKRRN KQRRKRRTSL SCCRRRRGTK
4681 RAAMRAGKEK EPRKEKLGRS NGHKDSIKVI NRASKSASIS RKEPSNKSKQ KSKPPKSAQQ
4741 DLPSEIASAS RRSSKESLSR KSSKTPPEPN SLLKQSLDKQ PENKRRSKHK KRRRPSLSCC
4801 RRRRGTKRAG VRAGKEKLGR SIGATGSRGT PKSHRSVQQD LPPGIASASR RNSKEPLSRK
4861 SSKTPPEPNS LSKQSLDEQR EKDHRSKHER KRRPSLSCCR RRRGMKRAAM RAGKEKQVVP
4921 NEERLGRSSR RKRSRRGVPR HTPKSPSSVQ QDLPPGIASA SRRSSKELLS RKSPTTPFDP
4981 NSLLKQNLDR QPEVATVPHD KRKNMRRPSL SCCRKKRAPE FQPHRKADRS KDGEIPSTAI
5041 DIDSSIRPRR RRTEGSSEEA RGDRQKYSGE LVKDKDEQYH VTKPPSDDAA FEPSIGRGSE
5101 LVPLEDSIDP QYPAQRIVIT SFVRNGCHIK RWLYEDSYPI GGVRPAIADL VCSGPRDMRC
5161 RCGRRSVCDR SCVEDFSAKR HSTYHNYDSE RIRGELQRLD AIVKNLDD
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