LOCUS WKY05663.1 5208 aa PRT INV 31-JUL-2023 DEFINITION Nippostrongylus brasiliensis hypothetical protein protein. ACCESSION CP130735-2487 PROTEIN_ID WKY05663.1 SOURCE Nippostrongylus brasiliensis ORGANISM Nippostrongylus brasiliensis Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae; Nippostrongylus. REFERENCE 1 (bases 1 to 50441521) AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D., Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G. and Dillman,A.R. TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its transcriptomics JOURNAL Unpublished REFERENCE 2 (bases 1 to 50441521) AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D., Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G. and Dillman,A.R. TITLE Direct Submission JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853, USA COMMENT ##Genome-Assembly-Data-START## Assembly Date :: 03-JUN-2022 Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022; racon v. 1.4.20; POLCA (in MaSuRCA) v. 4.0.8; 3d-dna v. 180419 Assembly Name :: Nippo_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 76.0x Sequencing Technology :: Oxford Nanopore PromethION; Illumina HiSeq; Omni-C ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Nippostrongylus brasiliensis" /mol_type="genomic DNA" /strain="MIMR" /db_xref="taxon:27835" /chromosome="IV" /sex="pooled male and female" /tissue_type="Whole animal" /dev_stage="Adults" /geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside School of Medicine, Riverside, CA" /collection_date="2021/2022" protein /locus_tag="Q1695_006118" /note="NIPPO_CHRIV.G9958.T3" intron_pos 47:0 (1/76) intron_pos 105:1 (2/76) intron_pos 136:0 (3/76) intron_pos 210:0 (4/76) intron_pos 283:0 (5/76) intron_pos 430:0 (6/76) intron_pos 503:0 (7/76) intron_pos 576:0 (8/76) intron_pos 649:0 (9/76) intron_pos 722:0 (10/76) intron_pos 795:0 (11/76) intron_pos 868:0 (12/76) intron_pos 941:0 (13/76) intron_pos 957:0 (14/76) intron_pos 1001:0 (15/76) intron_pos 1074:0 (16/76) intron_pos 1147:0 (17/76) intron_pos 1220:0 (18/76) intron_pos 1293:0 (19/76) intron_pos 1366:0 (20/76) intron_pos 1439:0 (21/76) intron_pos 1487:0 (22/76) intron_pos 1560:0 (23/76) intron_pos 1635:0 (24/76) intron_pos 1710:0 (25/76) intron_pos 1783:0 (26/76) intron_pos 1856:0 (27/76) intron_pos 1929:0 (28/76) intron_pos 2002:0 (29/76) intron_pos 2075:0 (30/76) intron_pos 2148:0 (31/76) intron_pos 2221:0 (32/76) intron_pos 2294:0 (33/76) intron_pos 2367:0 (34/76) intron_pos 2444:0 (35/76) intron_pos 2516:0 (36/76) intron_pos 2592:0 (37/76) intron_pos 2697:0 (38/76) intron_pos 2753:0 (39/76) intron_pos 2812:0 (40/76) intron_pos 2888:0 (41/76) intron_pos 2960:0 (42/76) intron_pos 3032:0 (43/76) intron_pos 3104:0 (44/76) intron_pos 3176:0 (45/76) intron_pos 3248:0 (46/76) intron_pos 3320:0 (47/76) intron_pos 3392:0 (48/76) intron_pos 3464:0 (49/76) intron_pos 3536:0 (50/76) intron_pos 3608:0 (51/76) intron_pos 3680:0 (52/76) intron_pos 3752:0 (53/76) intron_pos 3824:0 (54/76) intron_pos 3896:0 (55/76) intron_pos 3968:0 (56/76) intron_pos 4040:0 (57/76) intron_pos 4103:0 (58/76) intron_pos 4166:0 (59/76) intron_pos 4277:0 (60/76) intron_pos 4343:0 (61/76) intron_pos 4469:0 (62/76) intron_pos 4595:0 (63/76) intron_pos 4649:0 (64/76) intron_pos 4776:0 (65/76) intron_pos 4830:0 (66/76) intron_pos 4875:0 (67/76) intron_pos 4936:2 (68/76) intron_pos 4987:0 (69/76) intron_pos 5019:0 (70/76) intron_pos 5043:1 (71/76) intron_pos 5063:1 (72/76) intron_pos 5093:0 (73/76) intron_pos 5121:2 (74/76) intron_pos 5158:2 (75/76) intron_pos 5180:0 (76/76) BEGIN 1 MAKRDRLQET TIPQQEAVVE IVDSKREVKR KTDTDRVTTT DSLIEQDIVK RTEVRNNQMK 61 ERITWTTRER IVETTDELVA NAPGPRRSGQ SLTWMGKRQE VNDKGLSSAP SRSDTPLTSK 121 GNSQTTPDPN TLTGEKANSK HQDEKVHGQM KVPEAANERE RSFKGKEEKD ITRVDLPSRV 181 HQASNRDSDK PLARNASQTI SEPNSLLDQS ASRRHKDAKV ERKKAVPRKV AESERRAKGE 241 RIALSQYDLP SGLKSASNTD FDGPLERDIS GTNSEPNSLH EQGESRRHED AKGPKQKEGP 301 RKAPDRDRRT KGERITRAQY DLPPGLQSAS NTEFDSPLAK DISETNSEPN SLLEQVAVFQ 361 QALLKRIFHG TSPHNGNIKE IQRAKGTRTT RKQIDLPPGL KNQPNTDRDE PFARDILRVN 421 SEPNSLHEQS SSRNHKDAKV ERKKEVPRKV AESERSAKVE RITRTQYDLP PGLNNASSTD 481 IDGAFARDIS RTDTEPNSLR EQSVGRKHKD AKVERKKEVP RKVAESERSA KVERITRTQY 541 DLPPGLNNAS STDIDGPFAR DISRTDTEPN SLREQSVGRK HKDAKVERKK EVPRKVAESE 601 RSAKVERITR TQYDLPPGLN NASSTDIDGP FARDISRTDT EPNSLREQSV DRRHRDAKVE 661 RKKEVPRKVS ESERSAKVER ITRTQYDLPP GLNNASSTDI DGPFARDISR TDTEPNSLRE 721 QSAGRRRRDA KVERKKEVPR KVSESERSAK VERITRTQYD LPTGLNNASK VETDGPVAGD 781 TSRANTEPNS LREQSVGRKH KDAKVERKKE VPRKVAESER SAKVERITRT QYDLPPGLNN 841 ASSTDIDGPF ARDISRTDTE PNSLREQSVG GKHKVAKVER KKEVTRKVAK SERNAKVERI 901 TKTQYDLPPG LNNASSTDFD GPVAGDTSRA NTEPNSLREQ SVGGKHKVAK VERKKEVERI 961 TKTQYDLPPG LNNASSTDFD GPVAGDTSRA NTEPNSLREQ SVGGKHKVAK VERKKEVTRK 1021 VAKSERSAKV GRITKTQYDL PPGLNNASST DFDGPVAGDT SRANTEPNSL REQSVGGKHK 1081 VAKVERKKEV TRKVAKSERN AKVERITRTQ YDLPPGLNNA SSTDIDGPFA RDISRTDTEP 1141 NSLREQSVGR KHKDAKVERK KEVPRKVSER ERSAKVERIT KTQHDLPPGL NNASRTDIDG 1201 QFARDISRTD TEPNSLREQS VGRKHKDAKV ESKKEVPRKV SESERSAKVE RITRTQYDLP 1261 PGLNNASSTD IDGPFARDIS RTDTEPNSLR EQSAGRRRRD AKVERKKEVP RKVSESERSA 1321 KVERITRTQY DLPPGLNNAS NVETDGPVAG DTSRANTEPN SLREQSVGRK HKDAKVERKK 1381 EVPRKVSERE RSAKVERITK TQHDLPPGLN NASSTDIDGP FARDISRTDT EPNSLREQGI 1441 GRRKMKSAQH NLTSRKTSNA SNTGFEITLP KDTSTVDPEP NTLINQSVKR RHEKRSKPVE 1501 LQKESDSESV DKKRKTKAFT NVLYGLPYGL ICVSNWAIER TLERDNSGTR SEPNSLIGQS 1561 VGRRLKNGKD RKHQNQPRKA QENEGISKGK RTTTAFTNSQ HDLPFGMKNT PERLHEKLLA 1621 RDTSLSEPNS LLNQNVDQGH MDKKDRKQKK KNRKALKIVK AAKEKRTTKV FMNVQHDLPS 1681 GLKNTSERDF KKSWDASETL SEPNSLANQS VSRKRDSEKR PEEVHREEPE SKRSAKERRT 1741 SKAFLNVQHD LPSGLKNASE RDFRKSMDVS ETLCEPNYLA NQSVSRKRDS EKGPEEVHRE 1801 EPESKRSAKE RRTSKAFLNV QHDLPSGLKN ASERDFRKSM DVSETLSEPN YLANQSVSRK 1861 RDSEKRPEEV HREEPESKRS AKERRTSKAF LNVQHDLPFG LKNASERDFR KSMDVSETLS 1921 EPNYLANQSV SRKRDSEKRP EEVHMEEPES KRSAKERHTS KAFLNVQHDL PFGLKNASER 1981 DFRKSMDVSE TLSEPNYLAN QSVSRKRDSE KGPEEVHREE PESKRSAKER RTSKAFLNVQ 2041 HDLPSGLKNA SERDFRKSMD VSETLSESNY LANQSVSRKR DSEKRPEEVH REEPESKRSA 2101 KERRTSKAFL NVQHDLPFGL KNASERDFRK SMDVSETLSE PNYLANQSVS RKRDSEKRPE 2161 EVHREEPESK RSAKERRTSK AFLNVQHDLP FGLKNASERD FRKSMDVSET LSEPNYLANQ 2221 SVSRKRDSEK RPEEVHREEP ESRRSAKERR TSKAFLNVQH DLPFGLKNAS ERDFRKSMDV 2281 SETLSEPNYL ANQSVSRKRD SEKRPEEVHR EEPESKRSAK ERRTSKAFLN AQHDLPSGLK 2341 NASERDFKKS MDASETLSEP NYLDNQSTSK RPKTEHGEMQ QNVSREARES GRIAKGKPSP 2401 KVFMNLQHDL PPGLNNASKK DFERPFAKES SEKLPETNSL RCQSLSRRHK DEKGRKQQEL 2461 LEIASISHRK ADEMNTMKPF ENAQHDLPRG LVDASKTEFK CVSGENPEPN YLTPQAFSAE 2521 HNKWKDETQK TVLPENKGRT TEKHSAMALT NVQHDLHHAP TLSSVPSTKS KMTLQEDRVE 2581 KLPDPSNIMD KSVCLKPEKA KEEPCKELNS VSTAKEKCVS TVCRSSRDEH AWVGQRFEEG 2641 KREVATKAEP KSVAENGTAA PPQDTDLKTA MNVLVETETA KADTDRVTTT DSLIENKMVK 2701 TTEVIGNQTR ERITWTIRKR IVERTDEWKR EPGTPGPRKS GQSITWKGKR KEKLLNKEEL 2761 AKSSAEKKLS DVPSNLKRNL LFEPPPNMDF GTPLPNDSSA ASSQPNSSIV QSVSSTHEHV 2821 RGPIQKEKPG QRPDNVDVSG KRTKSVLTNV LYGLPIGLKK ATNWVMERPL AKGSSRTESE 2881 PNSLLSQSVS RRHKDAEVLI QKEKPRNMPE SEGAREKKTT ETFMSVQHDL PSGLEDACRR 2941 VFENQPSGTN SEPNCLLGQS VSGGHKDAEI PIQKEEPRRV PENEDEKEIA TTKTLMSIQH 3001 DLPSGLEDAC RRVSENQPSG TNSEPNYLLG QSVTRRHKDA EIPIQKEEPR HVPESEDAKE 3061 KPTTRTLMSI QHDLPIGLEN ASKRVFENQP SGTSSEPNSL LGQSISRRHK DAEVSIEKEE 3121 PRIVPESEDA KKKPTSKAFM SVQHDLPIGL ENASKRVFEN QPSGTSSEPN SLLGQTVSRR 3181 HKDAEIPIQK EEPRVVHERE DAKKKPTSKA FMSVQHDLPI GLENASKRVF ENQPSGTSSE 3241 PNSLLGQTVS RRHKDAEIPI QKEEPRDVHE REGVKEKPTK KTFMSVQHDL PSGLENASKR 3301 VFENQPSGTS SEPNSLLGQT VSRRHKDAEI PIQKEEPRDV HEREDAKKKP TSKAFMSVQH 3361 DLPIGLENAS KRVFENQPSG TSSEPNSLLG QTVSRRHKDA EIPIQKEEPR DVHEREGVKE 3421 KPTKKTFMSV QHDLPSGLEN ASRRIFENQS SGTIFEPNSL LGQSISRRHK DAEVSIEKEE 3481 PRIVPESEDA KKKPTSKAFM SVQHDLPIGL ENASKRVFEN QPSGTSSEPN SLLGQSISRR 3541 HKDAEVSIEK EEPRIVPERE GVKEKPTTKT FMNVQHDLPI GLENASKRVF ENQPSGTSSE 3601 PNSLLGQSIS RRHKDAEVSI EKEEPRIVPE REGVKEKPTT KTFMNVQHDL PSGLENASRR 3661 IFENQSSGTI FEPNSLLGQS ISRRHKDAEI PIQKEEPRIV PEREGVKEKP TTKTFMNVQH 3721 DLPSGLENAS RRIFENQSSG TNSEPNSLLG QSISRRHKDA EVSIEKEEPR IVPEREGVKE 3781 KPTTKTFMNV QHDLPIGLEN ASKRVFENQP SGTSSEPNSL LGQTVSRRHK DAEIPIQKEE 3841 PRDVHEREDA KKKPTSKAFM SVQHDLPIGL ENASKRVFEN QPSGTSSEPN SLLGQSISRR 3901 HKGAEVSIEK EEPRIVPESE GVKEKPTKKT FMSVQHDLPS GLENASRRIF ENQSSGTISE 3961 PNSLLGQSIS RRHKDAEVSI EKEEPRIVPE REGVKEKPTT KTFMNVQHDL PIGLENASKR 4021 VFENQPSGTS SEPNSLLGQS ISRRYKDAEV PIEKEESKEK PTTKTFMNVQ HDLPIGLENA 4081 SRRVFENRSS GTNSEPNSLL GQSMSRRHKD AEVSIEKEEP KEKPTTKTFM NVQHDLPFGM 4141 ENASKRVFEN QSTGANSEPN SLFGQNVTPQ RLAHDNSDRS QRGKIVPLLL LPLYVKHGLR 4201 RTAEPAESEG SVVHGEHKCE QDIDPERGRE RRRTDDKRET LKRKQYNLPS GFASTSRCCK 4261 KSTSGRHSDP NSLTKQSVNG KKDVVNNHLE KREKSTLIGN KQLKERPKQT DLPTGIAGRH 4321 NGTEYRDRPS ECNSLTEQIN NRRPDKKRDE GTLQYKDRRK EHKKRKRPSV TCCRKRRAMK 4381 RAQREGQDLS RKEKFKETGG RRKNKKERHR SPRRAKDRSS RGTNDRYVPM SNAPSEQPDQ 4441 PPRTASASRR SEPLSAKTPD EPNSLLEQNL DNEGDVAAPQ RDEEPHMEHT KKNGPSLSCC 4501 CKRRATRRIA IRAGKEGKDI DTREGRGAMN RPPKSDDSSR REPSDKSRQK SKSSKNEEQN 4561 LPPGIASASR RGYKEALSRK GSKTPSEPNS LLEQKLHINP ELAAIPHKEK RLKKHKEHKK 4621 NGRLSLSCCC RRRRARRAAI RAGKETQESL DKQPEEKRRN KQRRKRRTSL SCCRRRRGTK 4681 RAAMRAGKEK EPRKEKLGRS NGHKDSIKVI NRASKSASIS RKEPSNKSKQ KSKPPKSAQQ 4741 DLPSEIASAS RRSSKESLSR KSSKTPPEPN SLLKQSLDKQ PENKRRSKHK KRRRPSLSCC 4801 RRRRGTKRAG VRAGKEKLGR SIGATGSRGT PKSHRSVQQD LPPGIASASR RNSKEPLSRK 4861 SSKTPPEPNS LSKQSLDEQR EKDHRSKHER KRRPSLSCCR RRRGMKRAAM RAGKEKQVVP 4921 NEERLGRSSR RKRSRRGVPR HTPKSPSSVQ QDLPPGIASA SRRSSKELLS RKSPTTPFDP 4981 NSLLKQNLDR QPEVATVPHD KRKNMRRPSL SCCRKKRAPE FQPHRKADRS KDGEIPSTAI 5041 DIDSSIRPRR RRTEGSSEEA RGDRQKYSGE LVKDKDEQYH VTKPPSDDAA FEPSIGRGSE 5101 LVPLEDSIDP QYPAQRIVIT SFVRNGCHIK RWLYEDSYPI GGVRPAIADL VCSGPRDMRC 5161 RCGRRSVCDR SCVEDFSAKR HSTYHNYDSE RIRGELQRLD AIVKNLDD //