LOCUS VTS03728.1 1287 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana hybrid histidine kinase : Candidate
histidine kinase, hybrid OS=Ramlibacter tataouinensis
(strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310)
GN=Rta_10540 PE=4 SV=1: CHASE3: PAS_4: PAS_3: GAF: PAS_4:
PAS_4: HisKA: HATPase_c: Response_reg protein.
ACCESSION LR593886-8506
PROTEIN_ID VTS03728.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_70860"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|F5Y0B7|F5Y0B7_RAMTT ;
ALN/Q_length_ratio=0.403 ; DESCRIPTION=Candidate histidine
kinase, hybrid OS=Ramlibacter tataouinensis (strain ATCC
BAA-407 / DSM 14655 / LMG 21543 / TTB310) GN=Rta_10540
PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=2.336"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|F5Y6H4|F5Y6H4_RAMTT ;
ALN/Q_length_ratio=0.483 ; DESCRIPTION=Candidate histidine
kinase, hybrid OS=Ramlibacter tataouinensis (strain ATCC
BAA-407 / DSM 14655 / LMG 21543 / TTB310) GN=Rta_29450
PE=4 SV=1 ; EVALUE=1e-163 ; Q/S_length_ratio=1.671"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|A0A085EYK4|A0A085EYK4_9BURK ;
ALN/Q_length_ratio=0.617 ; DESCRIPTION=PAS domain S-box
protein OS=Massilia sp. LC238 GN=FG94_04052 PE=4 SV=1 ;
EVALUE=1e-135 ; Q/S_length_ratio=1.573"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|A0A068Z2Z8|A0A068Z2Z8_9BURK ;
ALN/Q_length_ratio=0.414 ; DESCRIPTION=Signal transduction
histidine kinase OS=Polaromonas sp. CG9_12 PE=4 SV=1 ;
EVALUE=1e-134 ; Q/S_length_ratio=1.591"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|A4BUY9|A4BUY9_9GAMM ;
ALN/Q_length_ratio=0.443 ; DESCRIPTION=Multi-sensor hybrid
histidine kinase OS=Nitrococcus mobilis Nb-231
GN=NB231_07115 PE=4 SV=1 ; EVALUE=1e-126 ;
Q/S_length_ratio=1.549"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|A3ZU84|A3ZU84_9PLAN ;
ALN/Q_length_ratio=0.495 ; DESCRIPTION=PAS protein
OS=Blastopirellula marina DSM 3645 GN=DSM3645_21639 PE=4
SV=1 ; EVALUE=1e-124 ; Q/S_length_ratio=0.983"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|A0A017SZ65|A0A017SZ65_9DELT ;
ALN/Q_length_ratio=0.302 ; DESCRIPTION=Chemotaxis protein
methyltransferase CheR OS=Chondromyces apiculatus DSM 436
GN=CAP_7340 PE=4 SV=1 ; EVALUE=1e-122 ;
Q/S_length_ratio=2.096"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|F5XZ70|F5XZ70_RAMTT ;
ALN/Q_length_ratio=0.497 ; DESCRIPTION=Candidate histidine
kinase, hybrid OS=Ramlibacter tataouinensis (strain ATCC
BAA-407 / DSM 14655 / LMG 21543 / TTB310) GN=Rta_21440
PE=4 SV=1 ; EVALUE=1e-122 ; Q/S_length_ratio=1.671"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|B2TDE8|B2TDE8_BURPP ;
ALN/Q_length_ratio=0.444 ; DESCRIPTION=PAS/PAC sensor
hybrid histidine kinase OS=Burkholderia phytofirmans
(strain DSM 17436 / PsJN) GN=Bphyt_5296 PE=4 SV=1 ;
EVALUE=1e-121 ; Q/S_length_ratio=1.659"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|Q13MN8|Q13MN8_BURXL ;
ALN/Q_length_ratio=0.443 ; DESCRIPTION=PAS/PAC sensor
hybrid histidine kinase OS=Burkholderia xenovorans (strain
LB400) GN=Bxe_B1311 PE=4 SV=1 ; EVALUE=1e-120 ;
Q/S_length_ratio=1.659"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|W0VAE6|W0VAE6_9BURK ;
ALN/Q_length_ratio=0.400 ; DESCRIPTION=Sensory box protein
OS=Janthinobacterium agaricidamnosum NBRC 102515 = DSM
9628 GN=GJA_4246 PE=4 SV=1 ; EVALUE=1e-120 ;
Q/S_length_ratio=1.435"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|A0A089C3P1|A0A089C3P1_9BURK ;
ALN/Q_length_ratio=0.443 ; DESCRIPTION=Sensory box protein
OS=Burkholderia xenovorans GN=DR64_6618 PE=4 SV=1 ;
EVALUE=1e-120 ; Q/S_length_ratio=1.659"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|A0A086W666|A0A086W666_9BURK ;
ALN/Q_length_ratio=0.414 ; DESCRIPTION=Diguanylate cyclase
OS=Massilia consociata GN=JN27_22675 PE=4 SV=1 ;
EVALUE=1e-119 ; Q/S_length_ratio=1.661"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|D5C3W3|D5C3W3_NITHN ;
ALN/Q_length_ratio=0.451 ; DESCRIPTION=PAS sensor protein
OS=Nitrosococcus halophilus (strain Nc4) GN=Nhal_1977 PE=4
SV=1 ; EVALUE=1e-118 ; Q/S_length_ratio=1.633"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|F0SKC0|F0SKC0_PLABD ;
ALN/Q_length_ratio=0.464 ; DESCRIPTION=Multi-sensor hybrid
histidine kinase OS=Planctomyces brasiliensis (strain ATCC
49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448)
GN=Plabr_3280 PE=4 SV=1 ; EVALUE=1e-117 ;
Q/S_length_ratio=0.897"
/note="Pfam_scan:hit_1 (37..174); Pfam:PF05227.8:CHASE3;
Pfam_type:Domain;HMM_aln_Length:134; HMM_Length:138;
EVALUE:1.3e-27; BITSCORE: 96.2"
/note="Pfam_scan:hit_2 (229..344); Pfam:PF08448.5:PAS_4;
Pfam_type:Domain;HMM_aln_Length:108; HMM_Length:110;
EVALUE:9.9e-13; BITSCORE: 48.1"
/note="Pfam_scan:hit_3 (376..461); Pfam:PF08447.6:PAS_3;
Pfam_type:Domain;HMM_aln_Length:89; HMM_Length:91;
EVALUE:1.1e-08; BITSCORE: 35.0"
/note="Pfam_scan:hit_4 (497..635); Pfam:PF01590.21:GAF;
Pfam_type:Domain;HMM_aln_Length:148; HMM_Length:154;
EVALUE:5.2e-13; BITSCORE: 49.4"
/note="Pfam_scan:hit_5 (662..776); Pfam:PF08448.5:PAS_4;
Pfam_type:Domain;HMM_aln_Length:102; HMM_Length:110;
EVALUE:2.3e-06; BITSCORE: 27.6"
/note="Pfam_scan:hit_6 (799..909); Pfam:PF08448.5:PAS_4;
Pfam_type:Domain;HMM_aln_Length:108; HMM_Length:110;
EVALUE:8.3e-14; BITSCORE: 51.5"
/note="Pfam_scan:hit_7 (920..986); Pfam:PF00512.20:HisKA;
Pfam_type:Domain;HMM_aln_Length:65; HMM_Length:68;
EVALUE:6.8e-11; BITSCORE: 42.0"
/note="Pfam_scan:hit_8 (1032..1144);
Pfam:PF02518.21:HATPase_c;
Pfam_type:Domain;HMM_aln_Length:108; HMM_Length:111;
EVALUE:5.2e-28; BITSCORE: 96.9"
/note="Pfam_scan:hit_9 (1168..1280);
Pfam:PF00072.19:Response_reg;
Pfam_type:Domain;HMM_aln_Length:109; HMM_Length:112;
EVALUE:1.9e-22; BITSCORE: 79.3"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0016301"
/note="GO_domain:GO:0004871"
/note="Enzyme_Code:EC:2.7.3"
/note="Enzyme_Code:EC:2.7.13.3"
BEGIN
1 MAKELDRGVL TGIWLLAALV VINAGVSYWN TRKVHDDARQ VAHTQEVLTA LGAVRASACD
61 IEAAQRTFIL TGADRDRAAF QNAEGQTRAK LTRLTELTAD NPDQQARIAA LGAHVDRAVD
121 RLSATVAVRD ARGLEAAREI VAQGESRQLL DDADRTANEI ETAEQTLLRE RAIETERAYL
181 HARLFGAASA VFGLTAVGMF VWLLRHGTRA REAAAAKVWE QREWLRTTLA SIGDAVIATD
241 PAGNITFLNS VAETLTDWHN GTAVGRPLTE VFRIVNESTR VPVENPALRA LKSGTIVGLA
301 NHTILIAKDG TEYPIDDSAA PIRTPDGRVV GAVLVFRDIT ERKREEGERE RLAETLRLAV
361 AAADLGTWDW EPKTDRVTLS ERTIEIIGAA PGPNHTREWM RRVIHPDHRD RARNEAARAV
421 STRADYDIEY PLERDASVWI SARGRGVYDE SGELVRMLGV VQDITTQKNT ESALRESANQ
481 QQFLAELATT TQSIPGASEV MAATARLLAE YLNADRCAYA EVADESVFVV TGDYTRGVPS
541 MVGRWPVAAF GSECVRQMLA NEAYVVHDTH TDPRIGIADL PAYEAAAIRS VICVPLHKVG
601 QFTAAMAVHQ KTPRRWTPAE IQLVTTVVGR CWEALERARA AEAEQRLHAE ILAERGQLAE
661 VFQHSLSFMA VLRGPALVFE RVNDRFSELV GNRDVIGQAV REAVPEVEGQ GFFEILDRTY
721 RTGETYVATD ARVMLRTKDG ELEERILEFV YQAMRDATGA ISGILVQGID LTDHKRAEAE
781 LARVTAASER RRRLYETALS NTPDLIYVFD LEHRFTYANE ALLAMWGKTW DEAIGLTCSQ
841 LGYEPWHAAM HDQEIEQVAT TKRPIRGEVP FTGTNGRRIY DYIFAPVFGA QGEIEAVAGT
901 TRDVTDRQAM EQELREADKR KDEFIALLAH ELRNPLAPIR NGLQVLRLAG NDATALERTR
961 VMMDRQLSHM VRLVDDLLDA SRIGRNKLEL RLARVSLSEV LASAIETARP LIDSTGHTLN
1021 VSLPTELVPL DADLTRLAQV FSNLLTNSAK YTPRGGQITV SAECNGGEVV VAVRDTGIGI
1081 PARSLPSVFD MFSQVDRSIE RSTGGLGIGL ALVKGLVEMH GGTVTAASEG PGKGSTFAVR
1141 LPVPADQSEP LPEPHANAPV PVKHRRRVLV VDDNRDGAES MAEMLGLLGD EVQTAHDGLE
1201 AVTAAEEFRP ELILMDMGMP KLNGLDATRR IRSHSWGREM IIIALTGWGQ ENDRERSREA
1261 GCDGHLVKPM NFSELDKLLN TLGAKQK
//