LOCUS VTS03396.1 611 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : Uncultured bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1: Sigma70_r2: Sigma70_r4_2:
WD40: WD40 protein.
ACCESSION LR593886-8395
PROTEIN_ID VTS03396.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_71970"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|A0A090KPX2|A0A090KPX2_9BACT ;
ALN/Q_length_ratio=0.900 ; DESCRIPTION=Uncultured
bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1 ; EVALUE=6e-54 ;
Q/S_length_ratio=0.527"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DT29|L0DT29_SINAD ;
ALN/Q_length_ratio=0.491 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7487 PE=4 SV=1 ; EVALUE=2e-48 ;
Q/S_length_ratio=1.227"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.404 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=7e-43 ;
Q/S_length_ratio=0.995"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DJM8|L0DJM8_SINAD ;
ALN/Q_length_ratio=0.455 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4894 PE=4 SV=1 ; EVALUE=1e-40 ;
Q/S_length_ratio=1.385"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DIU5|L0DIU5_SINAD ;
ALN/Q_length_ratio=0.393 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4592 PE=4 SV=1 ; EVALUE=9e-39 ;
Q/S_length_ratio=1.068"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DKD8|L0DKD8_SINAD ;
ALN/Q_length_ratio=0.457 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4965 PE=4 SV=1 ; EVALUE=5e-38 ;
Q/S_length_ratio=0.684"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.408 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=1e-36 ;
Q/S_length_ratio=0.554"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.347 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=1e-35 ;
Q/S_length_ratio=1.441"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DQA3|L0DQA3_SINAD ;
ALN/Q_length_ratio=0.430 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6979 PE=4 SV=1 ; EVALUE=2e-35 ;
Q/S_length_ratio=1.373"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.426 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=5e-35 ;
Q/S_length_ratio=1.091"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DIV6|L0DIV6_SINAD ;
ALN/Q_length_ratio=0.381 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4570 PE=4 SV=1 ; EVALUE=1e-33 ;
Q/S_length_ratio=1.217"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DDY6|L0DDY6_SINAD ;
ALN/Q_length_ratio=0.390 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2787 PE=4 SV=1 ; EVALUE=6e-33 ;
Q/S_length_ratio=1.119"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DHG5|L0DHG5_SINAD ;
ALN/Q_length_ratio=0.470 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3888 PE=4 SV=1 ; EVALUE=2e-32 ;
Q/S_length_ratio=0.870"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DFV7|L0DFV7_SINAD ;
ALN/Q_length_ratio=0.293 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3442 PE=4 SV=1 ; EVALUE=2e-32 ;
Q/S_length_ratio=0.498"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DPR4|L0DPR4_SINAD ;
ALN/Q_length_ratio=0.481 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6601 PE=4 SV=1 ; EVALUE=2e-32 ;
Q/S_length_ratio=1.008"
/note="Pfam_scan:hit_1 (44..113);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:63; HMM_Length:71;
EVALUE:3.4e-07; BITSCORE: 29.7"
/note="Pfam_scan:hit_2 (139..192);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:52; HMM_Length:54;
EVALUE:1.1e-10; BITSCORE: 40.7"
/note="Pfam_scan:hit_3 (528..566); Pfam:PF00400.27:WD40;
Pfam_type:Repeat;HMM_aln_Length:38; HMM_Length:39;
EVALUE:2.2e-10; BITSCORE: 40.0"
/note="Pfam_scan:hit_4 (570..608); Pfam:PF00400.27:WD40;
Pfam_type:Repeat;HMM_aln_Length:37; HMM_Length:39;
EVALUE:8.3e-13; BITSCORE: 47.6"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MSARLRAWFR AAPVTIASAE VNADDGELVR RFAEARDEVA FAELVRRHGP MVLATCRRVL
61 HPDVHTADDA FQATFLVLAT RAATVSPPER VGAWLYGVAV HVAKKARAWA RKLVSSAAVD
121 FTRVPVPSDA SDPDVTALRA KIDDVLAGLP TKYRSPIVLC DLEQRSRAEA AGLLGWSEGT
181 LSGRLSRARK LLADRLSRRG VAVPAAGLGV LLPASAALAT VPAQLAASTF RSAVLVAVGV
241 TAGDGIPAPV AALVQGVPMH TTTFKLFAAG VTGVALALGA FGLHALIAAD PPAPAQTTAA
301 PLAAPAATKG WGTKYTFTYK SAVTAVVFGL DLVAAGDVDG VLILWDTMTG KESETLLEGA
361 EAAKPINHLQ ISPDSAWLYL MTNDNANRHQ VGVPKKDRIF PGTGGNENFK AYGVTADGEY
421 WLQTSASDEH KNLRLLKNNF ANNVLTSENE GTFRHKEKVD LAAAGEADVV ATISDGVLRR
481 WDKTQAKPVW EEKLEKFEAT VLVVCPSSKA IAVGGKNGEV RVYAGLTGKV QATLKGHKDA
541 VNAIAFSADG KQVVTGGADK TARVYDAETG KERAVLKGHT DAVTTVAFNP GGEMIVTGSS
601 DKTVRVWEFK E
//