LOCUS VTS03396.1 611 aa PRT BCT 03-FEB-2020 DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma factor : Uncultured bacterium genome assembly Metasoil_fosmids_resub OS=uncultured bacterium PE=4 SV=1: Sigma70_r2: Sigma70_r4_2: WD40: WD40 protein. ACCESSION LR593886-8395 PROTEIN_ID VTS03396.1 SOURCE Gemmata massiliana ORGANISM Gemmata massiliana Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae; Gemmata. REFERENCE 1 AUTHORS CONSRTM Science for Life Laboratories JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution, Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden FEATURES Qualifiers source /organism="Gemmata massiliana" /chromosome="1" /isolate="Soil9" /mol_type="genomic DNA" /isolation_source="soil" /db_xref="taxon:1210884" protein /locus_tag="SOIL9_71970" /note="BLAST_uniprot:hit_1 ; ACCESSION=tr|A0A090KPX2|A0A090KPX2_9BACT ; ALN/Q_length_ratio=0.900 ; DESCRIPTION=Uncultured bacterium genome assembly Metasoil_fosmids_resub OS=uncultured bacterium PE=4 SV=1 ; EVALUE=6e-54 ; Q/S_length_ratio=0.527" /note="BLAST_uniprot:hit_2 ; ACCESSION=tr|L0DT29|L0DT29_SINAD ; ALN/Q_length_ratio=0.491 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_7487 PE=4 SV=1 ; EVALUE=2e-48 ; Q/S_length_ratio=1.227" /note="BLAST_uniprot:hit_3 ; ACCESSION=tr|L0DM90|L0DM90_SINAD ; ALN/Q_length_ratio=0.404 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_6419 PE=4 SV=1 ; EVALUE=7e-43 ; Q/S_length_ratio=0.995" /note="BLAST_uniprot:hit_4 ; ACCESSION=tr|L0DJM8|L0DJM8_SINAD ; ALN/Q_length_ratio=0.455 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_4894 PE=4 SV=1 ; EVALUE=1e-40 ; Q/S_length_ratio=1.385" /note="BLAST_uniprot:hit_5 ; ACCESSION=tr|L0DIU5|L0DIU5_SINAD ; ALN/Q_length_ratio=0.393 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_4592 PE=4 SV=1 ; EVALUE=9e-39 ; Q/S_length_ratio=1.068" /note="BLAST_uniprot:hit_6 ; ACCESSION=tr|L0DKD8|L0DKD8_SINAD ; ALN/Q_length_ratio=0.457 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_4965 PE=4 SV=1 ; EVALUE=5e-38 ; Q/S_length_ratio=0.684" /note="BLAST_uniprot:hit_7 ; ACCESSION=tr|L0DDR3|L0DDR3_SINAD ; ALN/Q_length_ratio=0.408 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_2497 PE=4 SV=1 ; EVALUE=1e-36 ; Q/S_length_ratio=0.554" /note="BLAST_uniprot:hit_8 ; ACCESSION=tr|L0DGG0|L0DGG0_SINAD ; ALN/Q_length_ratio=0.347 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_4264 PE=4 SV=1 ; EVALUE=1e-35 ; Q/S_length_ratio=1.441" /note="BLAST_uniprot:hit_9 ; ACCESSION=tr|L0DQA3|L0DQA3_SINAD ; ALN/Q_length_ratio=0.430 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_6979 PE=4 SV=1 ; EVALUE=2e-35 ; Q/S_length_ratio=1.373" /note="BLAST_uniprot:hit_10 ; ACCESSION=tr|L0D6V6|L0D6V6_SINAD ; ALN/Q_length_ratio=0.426 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_0102 PE=4 SV=1 ; EVALUE=5e-35 ; Q/S_length_ratio=1.091" /note="BLAST_uniprot:hit_11 ; ACCESSION=tr|L0DIV6|L0DIV6_SINAD ; ALN/Q_length_ratio=0.381 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_4570 PE=4 SV=1 ; EVALUE=1e-33 ; Q/S_length_ratio=1.217" /note="BLAST_uniprot:hit_12 ; ACCESSION=tr|L0DDY6|L0DDY6_SINAD ; ALN/Q_length_ratio=0.390 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_2787 PE=4 SV=1 ; EVALUE=6e-33 ; Q/S_length_ratio=1.119" /note="BLAST_uniprot:hit_15 ; ACCESSION=tr|L0DHG5|L0DHG5_SINAD ; ALN/Q_length_ratio=0.470 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_3888 PE=4 SV=1 ; EVALUE=2e-32 ; Q/S_length_ratio=0.870" /note="BLAST_uniprot:hit_14 ; ACCESSION=tr|L0DFV7|L0DFV7_SINAD ; ALN/Q_length_ratio=0.293 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_3442 PE=4 SV=1 ; EVALUE=2e-32 ; Q/S_length_ratio=0.498" /note="BLAST_uniprot:hit_13 ; ACCESSION=tr|L0DPR4|L0DPR4_SINAD ; ALN/Q_length_ratio=0.481 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_6601 PE=4 SV=1 ; EVALUE=2e-32 ; Q/S_length_ratio=1.008" /note="Pfam_scan:hit_1 (44..113); Pfam:PF04542.9:Sigma70_r2; Pfam_type:Domain;HMM_aln_Length:63; HMM_Length:71; EVALUE:3.4e-07; BITSCORE: 29.7" /note="Pfam_scan:hit_2 (139..192); Pfam:PF08281.7:Sigma70_r4_2; Pfam_type:Domain;HMM_aln_Length:52; HMM_Length:54; EVALUE:1.1e-10; BITSCORE: 40.7" /note="Pfam_scan:hit_3 (528..566); Pfam:PF00400.27:WD40; Pfam_type:Repeat;HMM_aln_Length:38; HMM_Length:39; EVALUE:2.2e-10; BITSCORE: 40.0" /note="Pfam_scan:hit_4 (570..608); Pfam:PF00400.27:WD40; Pfam_type:Repeat;HMM_aln_Length:37; HMM_Length:39; EVALUE:8.3e-13; BITSCORE: 47.6" /note="GO_domain:GO:0003677" /note="GO_domain:GO:0001071" /note="GO_domain:GO:0000988" /note="GO_domain:GO:0034641" /note="GO_domain:GO:0009058" /note="GO_domain:GO:0043234" /note="GO_domain:GO:0005622" BEGIN 1 MSARLRAWFR AAPVTIASAE VNADDGELVR RFAEARDEVA FAELVRRHGP MVLATCRRVL 61 HPDVHTADDA FQATFLVLAT RAATVSPPER VGAWLYGVAV HVAKKARAWA RKLVSSAAVD 121 FTRVPVPSDA SDPDVTALRA KIDDVLAGLP TKYRSPIVLC DLEQRSRAEA AGLLGWSEGT 181 LSGRLSRARK LLADRLSRRG VAVPAAGLGV LLPASAALAT VPAQLAASTF RSAVLVAVGV 241 TAGDGIPAPV AALVQGVPMH TTTFKLFAAG VTGVALALGA FGLHALIAAD PPAPAQTTAA 301 PLAAPAATKG WGTKYTFTYK SAVTAVVFGL DLVAAGDVDG VLILWDTMTG KESETLLEGA 361 EAAKPINHLQ ISPDSAWLYL MTNDNANRHQ VGVPKKDRIF PGTGGNENFK AYGVTADGEY 421 WLQTSASDEH KNLRLLKNNF ANNVLTSENE GTFRHKEKVD LAAAGEADVV ATISDGVLRR 481 WDKTQAKPVW EEKLEKFEAT VLVVCPSSKA IAVGGKNGEV RVYAGLTGKV QATLKGHKDA 541 VNAIAFSADG KQVVTGGADK TARVYDAETG KERAVLKGHT DAVTTVAFNP GGEMIVTGSS 601 DKTVRVWEFK E //