LOCUS VTS03087.1 469 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana ribosomal protein s12 methylthiotransferase
: Ribosomal protein S12 methylthiotransferase RimO OS=
Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=rimO PE=3 SV=1: UPF0004:
Radical_SAM protein.
ACCESSION LR593886-8292
PROTEIN_ID VTS03087.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_73000"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|D5SRP7|D5SRP7_PLAL2 ;
ALN/Q_length_ratio=0.945 ; DESCRIPTION=Ribosomal protein
S12 methylthiotransferase RimO OS=Planctomyces limnophilus
(strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=rimO
PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.013"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|F0SM65|F0SM65_PLABD ;
ALN/Q_length_ratio=0.977 ; DESCRIPTION=Ribosomal protein
S12 methylthiotransferase RimO OS=Planctomyces
brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 /
NBRC 103401 / IFAM 1448) GN=rimO PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.989"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|E8R3H0|E8R3H0_ISOPI ;
ALN/Q_length_ratio=0.964 ; DESCRIPTION=Ribosomal protein
S12 methylthiotransferase RimO OS=Isosphaera pallida
(strain ATCC 43644 / DSM 9630 / IS1B) GN=rimO PE=3 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=0.959"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|A4A2C7|A4A2C7_9PLAN ;
ALN/Q_length_ratio=0.908 ; DESCRIPTION=Ribosomal protein
S12 methylthiotransferase RimO OS=Blastopirellula marina
DSM 3645 GN=rimO PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.098"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|D2QWN1|D2QWN1_PIRSD ;
ALN/Q_length_ratio=0.964 ; DESCRIPTION=Ribosomal protein
S12 methylthiotransferase RimO OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=rimO PE=3
SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.009"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|H5SCT3|H5SCT3_9BACT ;
ALN/Q_length_ratio=1.058 ; DESCRIPTION=Ribosomal protein
S12 methylthiotransferase RimO OS=uncultured planctomycete
GN=rimO PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.929"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DKX8|L0DKX8_SINAD ;
ALN/Q_length_ratio=0.947 ; DESCRIPTION=Ribosomal protein
S12 methylthiotransferase RimO OS=Singulisphaera
acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454
/ MOB10) GN=rimO PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.983"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|M5RST1|M5RST1_9PLAN ;
ALN/Q_length_ratio=0.991 ; DESCRIPTION=Ribosomal protein
S12 methylthiotransferase RimO OS=Rhodopirellula maiorica
SM1 GN=rimO PE=3 SV=1 ; EVALUE=1e-177 ;
Q/S_length_ratio=0.992"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L7CDP7|L7CDP7_RHOBT ;
ALN/Q_length_ratio=0.985 ; DESCRIPTION=Ribosomal protein
S12 methylthiotransferase RimO OS=Rhodopirellula baltica
SWK14 GN=rimO PE=3 SV=1 ; EVALUE=1e-169 ;
Q/S_length_ratio=0.985"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|K5DAM6|K5DAM6_RHOBT ;
ALN/Q_length_ratio=0.985 ; DESCRIPTION=Ribosomal protein
S12 methylthiotransferase RimO OS=Rhodopirellula baltica
SH28 GN=rimO PE=3 SV=1 ; EVALUE=1e-168 ;
Q/S_length_ratio=0.985"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|F2AV24|F2AV24_RHOBT ;
ALN/Q_length_ratio=0.985 ; DESCRIPTION=Ribosomal protein
S12 methylthiotransferase RimO OS=Rhodopirellula baltica
WH47 GN=rimO PE=3 SV=1 ; EVALUE=1e-168 ;
Q/S_length_ratio=0.985"
/note="BLAST_uniprot:hit_12 ; ACCESSION=Q7UK39 ;
ALN/Q_length_ratio=0.985 ; DESCRIPTION=Ribosomal protein
S12 methylthiotransferase RimO OS=Rhodopirellula baltica
(strain SH1) GN=rimO PE=3 SV=1 ; EVALUE=1e-167 ;
Q/S_length_ratio=0.983"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|M5S7U7|M5S7U7_9PLAN ;
ALN/Q_length_ratio=0.964 ; DESCRIPTION=Ribosomal protein
S12 methylthiotransferase RimO OS=Rhodopirellula europaea
SH398 GN=rimO PE=3 SV=1 ; EVALUE=1e-167 ;
Q/S_length_ratio=1.029"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|M5SXW9|M5SXW9_9PLAN ;
ALN/Q_length_ratio=0.966 ; DESCRIPTION=Ribosomal protein
S12 methylthiotransferase RimO OS=Rhodopirellula sp. SWK7
GN=rimO PE=3 SV=1 ; EVALUE=1e-166 ;
Q/S_length_ratio=0.953"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|M2ANM3|M2ANM3_9PLAN ;
ALN/Q_length_ratio=0.964 ; DESCRIPTION=Ribosomal protein
S12 methylthiotransferase RimO OS=Rhodopirellula europaea
6C GN=rimO PE=3 SV=1 ; EVALUE=1e-166 ;
Q/S_length_ratio=0.985"
/note="Pfam_scan:hit_1 (25..124); Pfam:PF00919.15:UPF0004;
Pfam_type:Family;HMM_aln_Length:96; HMM_Length:98;
EVALUE:7e-27; BITSCORE: 93.1"
/note="Pfam_scan:hit_2 (173..345);
Pfam:PF04055.16:Radical_SAM;
Pfam_type:Domain;HMM_aln_Length:164; HMM_Length:166;
EVALUE:4.3e-26; BITSCORE: 92.0"
/note="GO_domain:GO:0005737"
/note="GO_domain:GO:0006464"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0003674"
BEGIN
1 MSVKSLPLTS SPGTGAPRAP ESKGNYAFIS LGCPKNTVDS ERMLGKLAQD GYALQPGADG
61 ADVVIVNTCG FIEPARQESL AVIREMLDLK RAGKVGAVVV AGCMAERQRD VLLEQVPEVD
121 QIVGVFGREE IADVVDRAVS QRDEQKSLFR PAPVRALEDT ARLRITPRHF AYLKISEGCD
181 RLCTYCAIPK MRGKHVTKPI EEIIREAHEL AADGVRELII VAQDTTYYGM DLYGCTRLAE
241 LLRELDKVDG IEWVRTLYAY PEHISDELIE TFAGAKKIIP YLDMPLQHIN DRVLKRMIRR
301 VDRAATEKLL LRLREQWPDL AIRTTFITGF PGETDAEYEE LKQFVADFKF ERVGVFPYSL
361 EPGTPAEKLD GHIPEDVKQT RVAAIMEVQQ RVAFGWAEAQ VDKEHPVIID GPDPEFANHF
421 RGRTYADAPE IDCEVRVKGK NLKPGDFVRV KITAADGYDL TAKALGKPW
//