LOCUS VTS02712.1 833 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_4264 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2: DUF3738 protein.
ACCESSION LR593886-8167
PROTEIN_ID VTS02712.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_74250"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.333 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=2e-50 ;
Q/S_length_ratio=1.965"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.367 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=3e-46 ;
Q/S_length_ratio=1.357"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0D7L2|L0D7L2_SINAD ;
ALN/Q_length_ratio=0.336 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0185 PE=4 SV=1 ; EVALUE=2e-42 ;
Q/S_length_ratio=1.663"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DJM8|L0DJM8_SINAD ;
ALN/Q_length_ratio=0.315 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4894 PE=4 SV=1 ; EVALUE=2e-41 ;
Q/S_length_ratio=1.889"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DPR4|L0DPR4_SINAD ;
ALN/Q_length_ratio=0.312 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6601 PE=4 SV=1 ; EVALUE=1e-40 ;
Q/S_length_ratio=1.375"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.316 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=2e-40 ;
Q/S_length_ratio=0.756"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DHB8|L0DHB8_SINAD ;
ALN/Q_length_ratio=0.418 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3834 PE=4 SV=1 ; EVALUE=8e-40 ;
Q/S_length_ratio=1.504"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.252 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=4e-38 ;
Q/S_length_ratio=1.728"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DA12|L0DA12_SINAD ;
ALN/Q_length_ratio=0.353 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_1318 PE=4 SV=1 ; EVALUE=5e-38 ;
Q/S_length_ratio=1.151"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DFV7|L0DFV7_SINAD ;
ALN/Q_length_ratio=0.248 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3442 PE=4 SV=1 ; EVALUE=9e-38 ;
Q/S_length_ratio=0.679"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DKD8|L0DKD8_SINAD ;
ALN/Q_length_ratio=0.346 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4965 PE=4 SV=1 ; EVALUE=2e-37 ;
Q/S_length_ratio=0.933"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.261 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=2e-37 ;
Q/S_length_ratio=2.611"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DIU5|L0DIU5_SINAD ;
ALN/Q_length_ratio=0.307 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4592 PE=4 SV=1 ; EVALUE=7e-37 ;
Q/S_length_ratio=1.456"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.323 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=3e-36 ;
Q/S_length_ratio=1.488"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DR85|L0DR85_SINAD ;
ALN/Q_length_ratio=0.309 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7453 PE=4 SV=1 ; EVALUE=2e-35 ;
Q/S_length_ratio=1.395"
/note="Pfam_scan:hit_1 (45..113);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:70; HMM_Length:71;
EVALUE:2.2e-10; BITSCORE: 39.9"
/note="Pfam_scan:hit_2 (142..195);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:51; HMM_Length:54;
EVALUE:1.7e-08; BITSCORE: 33.8"
/note="Pfam_scan:hit_3 (394..587); Pfam:PF12543.3:DUF3738;
Pfam_type:Family;HMM_aln_Length:170; HMM_Length:189;
EVALUE:3.1e-06; BITSCORE: 26.8"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MANQRLAATI DLLARSGIRG LSAVPDEQLV QHFARVRDES AFAELVRRHG SMVLGVCRRI
61 LTAGPDAEDA FQATFLFLAL RVGEIRNTAS VASWLHGVAR RVALNARKSR SRRTKHEQFA
121 ASDRPTEFTT EPATAASLTE LQGALDEELA RVPEPFRGAF VLCCLEGRTR PEAAVELSCT
181 EGTVSSRLAR ARQMLQDRLT RRGIAPAVAL TAGALFEIAV PPTLSASTAR IAGLLTTAGQ
241 GADTIPPAVA ALIEGVTTMT VKKTTVLAGL VVVAALAAGG IGLSAGSFQN RGPGAPPERP
301 TLSKGESPGD NQKKATSPSE YALKEGAVLK LVRAPFPEER DRLYMKFEAA KAFQPPPPSE
361 TRLMAVYTNG GTPVSANAFT DRSSPGTTEN GKPLAAFLEY PLNVDMANVL DRDHLLESVI
421 LDADVVLQKN AALDKLIPAL RDELKTKCGI DLRLEFAEVE TEVVRITGKH TLVSPAANPS
481 RLHDDAAVVH FYAKAREEHS NGIHTDTKQL PSQLAQFLGL PVIDESNLKS AAVWVTIRHH
541 LRYPITAKTR AEDADPVQVL KNVADQTGLT LKLEKQKVRV LVVEKQKKPA DPPKKLGRVP
601 DPEPNLQAEL ARWDTAFRHG SDEKFAELER TAGEWLKKYP GQDDRGHIYF QVAHVAAQSR
661 IDTQIARVRE YGQKVLEQSR DPVARGTVYS YLASAAEVDR TLKTFEERRR LAADVLLTGF
721 AEALAQELPA EAPELPAVNR IGGELENDPV EAARIRTQQA VQMEARREAK FVRDLVQRRN
781 TLVLQLRGLY RPTPNVHGRN EEGPKELRKL AAAKLSASAT EALLAEVMKP PAR
//