LOCUS VTS02637.1 588 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_2787 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2: SBP_bac_10 protein.
ACCESSION LR593886-8142
PROTEIN_ID VTS02637.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_74500"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DDY6|L0DDY6_SINAD ;
ALN/Q_length_ratio=0.895 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2787 PE=4 SV=1 ; EVALUE=3e-72 ;
Q/S_length_ratio=1.077"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DR85|L0DR85_SINAD ;
ALN/Q_length_ratio=0.587 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7453 PE=4 SV=1 ; EVALUE=1e-40 ;
Q/S_length_ratio=0.985"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|A0A090KHM8|A0A090KHM8_9BACT ;
ALN/Q_length_ratio=0.364 ; DESCRIPTION=Uncultured
bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1 ; EVALUE=1e-39 ;
Q/S_length_ratio=2.288"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DP71|L0DP71_SINAD ;
ALN/Q_length_ratio=0.344 ; DESCRIPTION=Antirepressor
regulating drug resistance protein OS=Singulisphaera
acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454
/ MOB10) GN=Sinac_6540 PE=4 SV=1 ; EVALUE=2e-39 ;
Q/S_length_ratio=0.632"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.459 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=7e-38 ;
Q/S_length_ratio=1.387"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DQE6|L0DQE6_SINAD ;
ALN/Q_length_ratio=0.473 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7079 PE=4 SV=1 ; EVALUE=3e-37 ;
Q/S_length_ratio=0.617"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DT29|L0DT29_SINAD ;
ALN/Q_length_ratio=0.408 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7487 PE=4 SV=1 ; EVALUE=9e-37 ;
Q/S_length_ratio=1.181"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DGT0|L0DGT0_SINAD ;
ALN/Q_length_ratio=0.434 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3827 PE=4 SV=1 ; EVALUE=3e-36 ;
Q/S_length_ratio=0.955"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.480 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=5e-36 ;
Q/S_length_ratio=1.843"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DIU5|L0DIU5_SINAD ;
ALN/Q_length_ratio=0.454 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4592 PE=4 SV=1 ; EVALUE=8e-36 ;
Q/S_length_ratio=1.028"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.602 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=2e-35 ;
Q/S_length_ratio=1.050"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.440 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=2e-35 ;
Q/S_length_ratio=0.958"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|E8R1A0|E8R1A0_ISOPI ;
ALN/Q_length_ratio=0.338 ; DESCRIPTION=Uncharacterized
protein OS=Isosphaera pallida (strain ATCC 43644 / DSM
9630 / IS1B) GN=Isop_0715 PE=4 SV=1 ; EVALUE=3e-35 ;
Q/S_length_ratio=0.691"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DQA3|L0DQA3_SINAD ;
ALN/Q_length_ratio=0.498 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6979 PE=4 SV=1 ; EVALUE=6e-34 ;
Q/S_length_ratio=1.321"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0D782|L0D782_SINAD ;
ALN/Q_length_ratio=0.335 ; DESCRIPTION=Uncharacterized
protein OS=Singulisphaera acidiphila (strain ATCC BAA-1392
/ DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_0690 PE=4 SV=1
; EVALUE=2e-33 ; Q/S_length_ratio=0.704"
/note="Pfam_scan:hit_1 (43..111);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:68; HMM_Length:71;
EVALUE:7.5e-12; BITSCORE: 44.6"
/note="Pfam_scan:hit_2 (137..187);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:46; HMM_Length:54;
EVALUE:7.2e-12; BITSCORE: 44.5"
/note="Pfam_scan:hit_3 (306..388);
Pfam:PF07596.6:SBP_bac_10;
Pfam_type:Family;HMM_aln_Length:78; HMM_Length:265;
EVALUE:1.2e-15; BITSCORE: 58.2"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MSGSAINNYL RAVGIDPAAA GPSDAELVAR FSATRDESAF ELLVWRHAPL LQRVCRSVLR
61 DQHAAEDATQ ATFLALARKA GTFSGRGTVV GWLYRVARRV SVRLAKQRAR HPLASTELDR
121 VPAPDGLPAP TDGAGPLCEE VDRLPERYRV PVLLCFFEGL THTEAARRTG LPVGTIAGRL
181 SRAKALLARR LSRRGGVLAA VALPVVSGTF VGSTAQAAIL FATDRAIAPL VSGSVLSLAR
241 GATQPVISSL KLTAAAVAVA CTVSASVWAF NASAPVSIPN EDTPRAAAPT ATEPPAPKSD
301 ARVAGAVQRA KSANTLKQIL IAIHNYEAAY GALPQDIVDK NGKPLLSWRV AILPFVEHER
361 LYKEFNLDEP WDSAANKKLL AQMPNLFRVD GQAKGEIRTY YRVFSGPGAA FEPGEKIAFA
421 GVTDGLSNTI GVIEAGPPSE WTKPGDIAYD PKKPFPKLEG PFKNVVMAGM MDGSVVPFKP
481 DLDAAEFRKF VERADGQVVN IDKAKTNITA LTKEDLNALE KVLKEDVELG TRFSKLLAER
541 TKLLEQIAKR PAPELDLEKF SDEQTALRAH IVRLEEQIEI LKKALENK
//