LOCUS VTS01648.1 293 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 region 2 : RNA polymerase
sigma factor OS=Planctomyces brasiliensis (strain ATCC
49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448)
GN=Plabr_0594 PE=3 SV=1: Sigma70_r2 protein.
ACCESSION LR593886-7813
PROTEIN_ID VTS01648.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_77790"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|F0SF66|F0SF66_PLABD ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=RNA polymerase
sigma factor OS=Planctomyces brasiliensis (strain ATCC
49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448)
GN=Plabr_0594 PE=3 SV=1 ; EVALUE=1e-149 ;
Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|A6C2N1|A6C2N1_9PLAN ;
ALN/Q_length_ratio=1.003 ; DESCRIPTION=RNA polymerase
sigma factor OS=Planctomyces maris DSM 8797
GN=PM8797T_09229 PE=3 SV=1 ; EVALUE=1e-147 ;
Q/S_length_ratio=0.980"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|D2R2Z3|D2R2Z3_PIRSD ;
ALN/Q_length_ratio=0.997 ; DESCRIPTION=RNA polymerase
sigma factor OS=Pirellula staleyi (strain ATCC 27377 / DSM
6068 / ICPB 4128) GN=Psta_4074 PE=3 SV=1 ; EVALUE=1e-146 ;
Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|A3ZQ94|A3ZQ94_9PLAN ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=RNA polymerase
sigma factor OS=Blastopirellula marina DSM 3645
GN=DSM3645_23286 PE=3 SV=1 ; EVALUE=1e-144 ;
Q/S_length_ratio=0.997"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|D5SXY2|D5SXY2_PLAL2 ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=RNA polymerase
sigma factor OS=Planctomyces limnophilus (strain ATCC
43296 / DSM 3776 / IFAM 1008 / 290) GN=Plim_3964 PE=3 SV=1
; EVALUE=1e-142 ; Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|K8IWN3|K8IWN3_LEPIR ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=Sigma-70 region 2
OS=Leptospira interrogans serovar Pyrogenes str.
2006006960 GN=LEP1GSC019_0048 PE=4 SV=1 ; EVALUE=2e-89 ;
Q/S_length_ratio=0.990"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|K6DAT0|K6DAT0_LEPIR ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=Sigma-70 region 2
OS=Leptospira interrogans str. 2002000624
GN=LEP1GSC027_2061 PE=4 SV=1 ; EVALUE=4e-89 ;
Q/S_length_ratio=0.990"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|N1ULU2|N1ULU2_LEPIR ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=Sigma-70 region 2
OS=Leptospira interrogans serovar Australis str. 200703203
GN=LEP1GSC115_0223 PE=4 SV=1 ; EVALUE=4e-89 ;
Q/S_length_ratio=0.990"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|M6FAK7|M6FAK7_LEPIR ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=Sigma-70 region 2
OS=Leptospira interrogans str. Kito GN=LEP1GSC075_0679
PE=4 SV=1 ; EVALUE=4e-89 ; Q/S_length_ratio=0.990"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|K6TGF8|K6TGF8_LEPIR ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=Sigma-70 region 2
OS=Leptospira interrogans str. 2002000621
GN=LEP1GSC025_0286 PE=4 SV=1 ; EVALUE=4e-89 ;
Q/S_length_ratio=0.990"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|M6QCX1|M6QCX1_LEPIR ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=Sigma-70 region 2
OS=Leptospira interrogans serovar Medanensis str. UT053
GN=LEP1GSC110_1284 PE=4 SV=1 ; EVALUE=4e-89 ;
Q/S_length_ratio=0.990"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|M6BI92|M6BI92_LEPIR ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=Sigma-70 region 2
OS=Leptospira interrogans str. 2002000631
GN=LEP1GSC032_2537 PE=4 SV=1 ; EVALUE=4e-89 ;
Q/S_length_ratio=0.990"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|M6AJU7|M6AJU7_LEPIR ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=Sigma-70 region 2
OS=Leptospira interrogans str. 2003000735
GN=LEP1GSC034_2771 PE=4 SV=1 ; EVALUE=4e-89 ;
Q/S_length_ratio=0.990"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|K6TM10|K6TM10_LEPIR ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=Sigma-70 region 2
OS=Leptospira interrogans str. 2002000623
GN=LEP1GSC026_1244 PE=4 SV=1 ; EVALUE=4e-89 ;
Q/S_length_ratio=0.990"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|M6AVH2|M6AVH2_LEPIR ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=Sigma-70 region 2
OS=Leptospira interrogans str. 2002000632
GN=LEP1GSC033_2598 PE=4 SV=1 ; EVALUE=4e-89 ;
Q/S_length_ratio=0.990"
/note="Pfam_scan:hit_1 (32..99);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:66; HMM_Length:71;
EVALUE:1.2e-14; BITSCORE: 53.6"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MFNPFAEVVD ESDDLALIES ARGGGLDSLE KLILRHQAWV YNIAVRMVFH PQDAEEVTQE
61 VLIKAVTHLS TFRGGSTFRT WLYRIAANHV MNMKRRGAEL QPHTFAEYGA AVEGVPDMDL
121 PDPNTVPVDV PLLVEEAKLT CTTGMLLCLD RRQRLVFTLG EVLGVSDTVG GEVLEMLADN
181 FRQSLARARR DLYQFMHDRC GLVNADNPCR CPKKTKGFIS AGHVDPDRLL FASRHALQVR
241 TAAHDTVREI ENTLDRQYAD VFRDHPFHQS PDQVAWLRRL LDQPAVRTTL RLS
//