LOCUS VTS00357.1 1142 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana transcription-repair coupling factor
: Transcription-repair-coupling factor OS=Singulisphaera
acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454
/ MOB10) GN=mfd PE=3 SV=1: CarD_CdnL_TRCF: DEAD: Helicase_C:
TRCF protein.
ACCESSION LR593886-7381
PROTEIN_ID VTS00357.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_82110"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|D5SWE7|D5SWE7_PLAL2 ;
ALN/Q_length_ratio=0.946 ;
DESCRIPTION=Transcription-repair-coupling factor
OS=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776
/ IFAM 1008 / 290) GN=mfd PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.035"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|E8R467|E8R467_ISOPI ;
ALN/Q_length_ratio=0.928 ;
DESCRIPTION=Transcription-repair-coupling factor
OS=Isosphaera pallida (strain ATCC 43644 / DSM 9630 /
IS1B) GN=mfd PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.028"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|Q7UQN7|Q7UQN7_RHOBA ;
ALN/Q_length_ratio=0.967 ;
DESCRIPTION=Transcription-repair-coupling factor
OS=Rhodopirellula baltica (strain SH1) GN=mfd PE=3 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=0.967"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|A6CB65|A6CB65_9PLAN ;
ALN/Q_length_ratio=0.969 ;
DESCRIPTION=Transcription-repair-coupling factor
OS=Planctomyces maris DSM 8797 GN=mfd PE=3 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=1.027"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|D2R0K5|D2R0K5_PIRSD ;
ALN/Q_length_ratio=0.940 ;
DESCRIPTION=Transcription-repair-coupling factor
OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB
4128) GN=mfd PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.051"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|M5U514|M5U514_9PLAN ;
ALN/Q_length_ratio=0.975 ;
DESCRIPTION=Transcription-repair-coupling factor
OS=Rhodopirellula sallentina SM41 GN=mfd PE=3 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=0.988"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L7CE49|L7CE49_RHOBT ;
ALN/Q_length_ratio=0.967 ;
DESCRIPTION=Transcription-repair-coupling factor
OS=Rhodopirellula baltica SWK14 GN=mfd PE=3 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=1.020"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|M5RKR5|M5RKR5_9PLAN ;
ALN/Q_length_ratio=0.902 ;
DESCRIPTION=Transcription-repair-coupling factor
OS=Rhodopirellula maiorica SM1 GN=mfd PE=3 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=1.081"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|F2APB5|F2APB5_RHOBT ;
ALN/Q_length_ratio=0.967 ;
DESCRIPTION=Transcription-repair-coupling factor
OS=Rhodopirellula baltica WH47 GN=mfd PE=3 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=1.002"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|M5SCD6|M5SCD6_9PLAN ;
ALN/Q_length_ratio=0.952 ;
DESCRIPTION=Transcription-repair-coupling factor
OS=Rhodopirellula europaea SH398 GN=mfd PE=3 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=1.013"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|A4A0Y1|A4A0Y1_9PLAN ;
ALN/Q_length_ratio=0.943 ;
DESCRIPTION=Transcription-repair-coupling factor
OS=Blastopirellula marina DSM 3645 GN=mfd PE=3 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=1.060"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|M2AD86|M2AD86_9PLAN ;
ALN/Q_length_ratio=0.919 ;
DESCRIPTION=Transcription-repair-coupling factor
OS=Rhodopirellula europaea 6C GN=mfd PE=3 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=1.005"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|K5D374|K5D374_RHOBT ;
ALN/Q_length_ratio=0.967 ;
DESCRIPTION=Transcription-repair-coupling factor
OS=Rhodopirellula baltica SH28 GN=mfd PE=3 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=1.020"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|F0SHM0|F0SHM0_PLABD ;
ALN/Q_length_ratio=0.949 ;
DESCRIPTION=Transcription-repair-coupling factor
OS=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305
/ JCM 21570 / NBRC 103401 / IFAM 1448) GN=mfd PE=3 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=1.025"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DMA1|L0DMA1_SINAD ;
ALN/Q_length_ratio=0.934 ;
DESCRIPTION=Transcription-repair-coupling factor
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=mfd PE=3 SV=1 ; EVALUE=0.0
; Q/S_length_ratio=1.052"
/note="Pfam_scan:hit_1 (496..576);
Pfam:PF02559.11:CarD_CdnL_TRCF;
Pfam_type:Family;HMM_aln_Length:75; HMM_Length:98;
EVALUE:1e-10; BITSCORE: 41.5"
/note="Pfam_scan:hit_2 (605..768); Pfam:PF00270.24:DEAD;
Pfam_type:Domain;HMM_aln_Length:151; HMM_Length:169;
EVALUE:4.1e-21; BITSCORE: 75.1"
/note="Pfam_scan:hit_3 (835..910);
Pfam:PF00271.26:Helicase_C;
Pfam_type:Family;HMM_aln_Length:69; HMM_Length:78;
EVALUE:7.2e-11; BITSCORE: 41.7"
/note="Pfam_scan:hit_4 (1003..1101); Pfam:PF03461.10:TRCF;
Pfam_type:Domain;HMM_aln_Length:88; HMM_Length:101;
EVALUE:7.1e-24; BITSCORE: 83.7"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0043167"
/note="GO_domain:GO:0006259"
/note="GO_domain:GO:0006950"
BEGIN
1 MTTAAVAAPA DAGLRALPSL LETTEGWAEL RAALLSGRSG TVDGAWGSSA ALAAATLAAE
61 TPGTLLVVVP NPTDVEPWQE DIASFTGTRP ALFEAWESWP VTSNKGKLDP ITTSRLRLLQ
121 QLTSGAPKIV VCGVASVCQP VPERADLAAR GRTISANEIV DPSELAEWLV TNGYKRVDAV
181 EYPGEFSRRG GICDIFPPDA PDPYRFEFFG DEVESIRSFA AGSQRSLEKK NSVVLLGVEI
241 VEPSVSAETE SNNSPPKRGL GGIAPARPRG HIADYLPPDS WVVLVEPREL KEQAKHFYER
301 VATTEGLHSP EQAFAHLMKR PSVVLSALPR PSVEASVHLR VESVNRFSGS VHRVRDELDS
361 IAHSSSARVL IACQSEAEVH RLTEVLKAGK LAESHRLQLV TGHVRGGFRL VESGTIVLGS
421 HEIFHKDLLP PGVKAQTRSS RQIESRAIDS FLDLNDGDYV VHVAHGIARF RGMHMLEKAR
481 GQDAEFGEES TEPSSSRKAE SRTAGPATEE HLVLEFRDGM FLYVPATRID LVQKYVGGSQ
541 TEPALSKPGG TSWGRKKEKV AEAVRDMAAE MINIQAVRQA VPGHQFPPDS DWQKEFEAAF
601 PYQETPDQLS AIVEVKGDLE KSKPMDRLIC GDVGYGKTEV AIRSAFKAVD SGKQVAILVP
661 TTVLAEQHYR TFTQRYAEYP FVVDVVNRFR GGAKQKETLK KLATGEVDVI VGTHRLLSKD
721 VKFKDLGLVV IDEEQRFGVE HKERLKHLRA MVDVLTMTAT PIPRTLHASL LGIREISNLE
781 TPPADRQPVE THITRWDDKL IRNAILREMN RGGQVYFVHN RVQDIFDIAT KVRILVPEAK
841 VTVGHGQMDA HDLEKAMVGF VRKDADILVA TTIIESGLDI PNANTIFIND ADTYGLADLH
901 QLRGRVGRSK HRSYAYFIVN PLKLLNPTAQ RRLKAIEEVT ELGAGVKIAM RDLEIPGAGN
961 ILGAEQSGHI AAIGYELYCQ LLENAVRALK QQAPKVSVEV TVDLPWPAYL PRDYVPGQKL
1021 RIEVYRRLAR LRDPAKLADF RQELRDRYGP HPDPVEWLLR TTEIRLLCVK WQVASVHRHD
1081 HNLVFTYRNP DRAKQLVAAS KGRLKIVDEK SIYLRLKNEE DNPEGLYKLL LGVLKPAQNA
1141 GK
//