LOCUS VTS00357.1 1142 aa PRT BCT 03-FEB-2020 DEFINITION Gemmata massiliana transcription-repair coupling factor : Transcription-repair-coupling factor OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=mfd PE=3 SV=1: CarD_CdnL_TRCF: DEAD: Helicase_C: TRCF protein. ACCESSION LR593886-7381 PROTEIN_ID VTS00357.1 SOURCE Gemmata massiliana ORGANISM Gemmata massiliana Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae; Gemmata. REFERENCE 1 AUTHORS CONSRTM Science for Life Laboratories JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution, Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden FEATURES Qualifiers source /organism="Gemmata massiliana" /chromosome="1" /isolate="Soil9" /mol_type="genomic DNA" /isolation_source="soil" /db_xref="taxon:1210884" protein /locus_tag="SOIL9_82110" /note="BLAST_uniprot:hit_4 ; ACCESSION=tr|D5SWE7|D5SWE7_PLAL2 ; ALN/Q_length_ratio=0.946 ; DESCRIPTION=Transcription-repair-coupling factor OS=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=mfd PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.035" /note="BLAST_uniprot:hit_2 ; ACCESSION=tr|E8R467|E8R467_ISOPI ; ALN/Q_length_ratio=0.928 ; DESCRIPTION=Transcription-repair-coupling factor OS=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) GN=mfd PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.028" /note="BLAST_uniprot:hit_12 ; ACCESSION=tr|Q7UQN7|Q7UQN7_RHOBA ; ALN/Q_length_ratio=0.967 ; DESCRIPTION=Transcription-repair-coupling factor OS=Rhodopirellula baltica (strain SH1) GN=mfd PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.967" /note="BLAST_uniprot:hit_5 ; ACCESSION=tr|A6CB65|A6CB65_9PLAN ; ALN/Q_length_ratio=0.969 ; DESCRIPTION=Transcription-repair-coupling factor OS=Planctomyces maris DSM 8797 GN=mfd PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.027" /note="BLAST_uniprot:hit_7 ; ACCESSION=tr|D2R0K5|D2R0K5_PIRSD ; ALN/Q_length_ratio=0.940 ; DESCRIPTION=Transcription-repair-coupling factor OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=mfd PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.051" /note="BLAST_uniprot:hit_15 ; ACCESSION=tr|M5U514|M5U514_9PLAN ; ALN/Q_length_ratio=0.975 ; DESCRIPTION=Transcription-repair-coupling factor OS=Rhodopirellula sallentina SM41 GN=mfd PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.988" /note="BLAST_uniprot:hit_8 ; ACCESSION=tr|L7CE49|L7CE49_RHOBT ; ALN/Q_length_ratio=0.967 ; DESCRIPTION=Transcription-repair-coupling factor OS=Rhodopirellula baltica SWK14 GN=mfd PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.020" /note="BLAST_uniprot:hit_14 ; ACCESSION=tr|M5RKR5|M5RKR5_9PLAN ; ALN/Q_length_ratio=0.902 ; DESCRIPTION=Transcription-repair-coupling factor OS=Rhodopirellula maiorica SM1 GN=mfd PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.081" /note="BLAST_uniprot:hit_10 ; ACCESSION=tr|F2APB5|F2APB5_RHOBT ; ALN/Q_length_ratio=0.967 ; DESCRIPTION=Transcription-repair-coupling factor OS=Rhodopirellula baltica WH47 GN=mfd PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.002" /note="BLAST_uniprot:hit_9 ; ACCESSION=tr|M5SCD6|M5SCD6_9PLAN ; ALN/Q_length_ratio=0.952 ; DESCRIPTION=Transcription-repair-coupling factor OS=Rhodopirellula europaea SH398 GN=mfd PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.013" /note="BLAST_uniprot:hit_3 ; ACCESSION=tr|A4A0Y1|A4A0Y1_9PLAN ; ALN/Q_length_ratio=0.943 ; DESCRIPTION=Transcription-repair-coupling factor OS=Blastopirellula marina DSM 3645 GN=mfd PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.060" /note="BLAST_uniprot:hit_13 ; ACCESSION=tr|M2AD86|M2AD86_9PLAN ; ALN/Q_length_ratio=0.919 ; DESCRIPTION=Transcription-repair-coupling factor OS=Rhodopirellula europaea 6C GN=mfd PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.005" /note="BLAST_uniprot:hit_11 ; ACCESSION=tr|K5D374|K5D374_RHOBT ; ALN/Q_length_ratio=0.967 ; DESCRIPTION=Transcription-repair-coupling factor OS=Rhodopirellula baltica SH28 GN=mfd PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.020" /note="BLAST_uniprot:hit_6 ; ACCESSION=tr|F0SHM0|F0SHM0_PLABD ; ALN/Q_length_ratio=0.949 ; DESCRIPTION=Transcription-repair-coupling factor OS=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) GN=mfd PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.025" /note="BLAST_uniprot:hit_1 ; ACCESSION=tr|L0DMA1|L0DMA1_SINAD ; ALN/Q_length_ratio=0.934 ; DESCRIPTION=Transcription-repair-coupling factor OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=mfd PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.052" /note="Pfam_scan:hit_1 (496..576); Pfam:PF02559.11:CarD_CdnL_TRCF; Pfam_type:Family;HMM_aln_Length:75; HMM_Length:98; EVALUE:1e-10; BITSCORE: 41.5" /note="Pfam_scan:hit_2 (605..768); Pfam:PF00270.24:DEAD; Pfam_type:Domain;HMM_aln_Length:151; HMM_Length:169; EVALUE:4.1e-21; BITSCORE: 75.1" /note="Pfam_scan:hit_3 (835..910); Pfam:PF00271.26:Helicase_C; Pfam_type:Family;HMM_aln_Length:69; HMM_Length:78; EVALUE:7.2e-11; BITSCORE: 41.7" /note="Pfam_scan:hit_4 (1003..1101); Pfam:PF03461.10:TRCF; Pfam_type:Domain;HMM_aln_Length:88; HMM_Length:101; EVALUE:7.1e-24; BITSCORE: 83.7" /note="GO_domain:GO:0003677" /note="GO_domain:GO:0043167" /note="GO_domain:GO:0006259" /note="GO_domain:GO:0006950" BEGIN 1 MTTAAVAAPA DAGLRALPSL LETTEGWAEL RAALLSGRSG TVDGAWGSSA ALAAATLAAE 61 TPGTLLVVVP NPTDVEPWQE DIASFTGTRP ALFEAWESWP VTSNKGKLDP ITTSRLRLLQ 121 QLTSGAPKIV VCGVASVCQP VPERADLAAR GRTISANEIV DPSELAEWLV TNGYKRVDAV 181 EYPGEFSRRG GICDIFPPDA PDPYRFEFFG DEVESIRSFA AGSQRSLEKK NSVVLLGVEI 241 VEPSVSAETE SNNSPPKRGL GGIAPARPRG HIADYLPPDS WVVLVEPREL KEQAKHFYER 301 VATTEGLHSP EQAFAHLMKR PSVVLSALPR PSVEASVHLR VESVNRFSGS VHRVRDELDS 361 IAHSSSARVL IACQSEAEVH RLTEVLKAGK LAESHRLQLV TGHVRGGFRL VESGTIVLGS 421 HEIFHKDLLP PGVKAQTRSS RQIESRAIDS FLDLNDGDYV VHVAHGIARF RGMHMLEKAR 481 GQDAEFGEES TEPSSSRKAE SRTAGPATEE HLVLEFRDGM FLYVPATRID LVQKYVGGSQ 541 TEPALSKPGG TSWGRKKEKV AEAVRDMAAE MINIQAVRQA VPGHQFPPDS DWQKEFEAAF 601 PYQETPDQLS AIVEVKGDLE KSKPMDRLIC GDVGYGKTEV AIRSAFKAVD SGKQVAILVP 661 TTVLAEQHYR TFTQRYAEYP FVVDVVNRFR GGAKQKETLK KLATGEVDVI VGTHRLLSKD 721 VKFKDLGLVV IDEEQRFGVE HKERLKHLRA MVDVLTMTAT PIPRTLHASL LGIREISNLE 781 TPPADRQPVE THITRWDDKL IRNAILREMN RGGQVYFVHN RVQDIFDIAT KVRILVPEAK 841 VTVGHGQMDA HDLEKAMVGF VRKDADILVA TTIIESGLDI PNANTIFIND ADTYGLADLH 901 QLRGRVGRSK HRSYAYFIVN PLKLLNPTAQ RRLKAIEEVT ELGAGVKIAM RDLEIPGAGN 961 ILGAEQSGHI AAIGYELYCQ LLENAVRALK QQAPKVSVEV TVDLPWPAYL PRDYVPGQKL 1021 RIEVYRRLAR LRDPAKLADF RQELRDRYGP HPDPVEWLLR TTEIRLLCVK WQVASVHRHD 1081 HNLVFTYRNP DRAKQLVAAS KGRLKIVDEK SIYLRLKNEE DNPEGLYKLL LGVLKPAQNA 1141 GK //