LOCUS VTS00334.1 357 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana trna pseudouridine synthase d : tRNA
pseudouridine synthase D OS=Planctomyces maris DSM 8797
GN=truD PE=3 SV=1: TruD protein.
ACCESSION LR593886-7373
PROTEIN_ID VTS00334.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_82190"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|A6C2P7|A6C2P7_9PLAN ;
ALN/Q_length_ratio=0.952 ; DESCRIPTION=tRNA pseudouridine
synthase D OS=Planctomyces maris DSM 8797 GN=truD PE=3
SV=1 ; EVALUE=9e-89 ; Q/S_length_ratio=1.003"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|D5SNU2|D5SNU2_PLAL2 ;
ALN/Q_length_ratio=1.017 ; DESCRIPTION=tRNA pseudouridine
synthase D OS=Planctomyces limnophilus (strain ATCC 43296
/ DSM 3776 / IFAM 1008 / 290) GN=truD PE=3 SV=1 ;
EVALUE=5e-86 ; Q/S_length_ratio=0.920"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|G8N9A9|G8N9A9_9DEIN ;
ALN/Q_length_ratio=0.958 ; DESCRIPTION=tRNA pseudouridine
synthase D OS=Thermus sp. CCB_US3_UF1 GN=truD PE=3 SV=1 ;
EVALUE=1e-80 ; Q/S_length_ratio=1.014"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|K7RK13|K7RK13_THEOS ;
ALN/Q_length_ratio=0.924 ; DESCRIPTION=tRNA pseudouridine
synthase D OS=Thermus oshimai JL-2 GN=truD PE=3 SV=1 ;
EVALUE=2e-80 ; Q/S_length_ratio=1.014"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|Q1D1X5|Q1D1X5_MYXXD ;
ALN/Q_length_ratio=0.941 ; DESCRIPTION=tRNA pseudouridine
synthase D OS=Myxococcus xanthus (strain DK 1622) GN=truD
PE=3 SV=1 ; EVALUE=2e-80 ; Q/S_length_ratio=1.038"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|A0A0A2WQX0|A0A0A2WQX0_THEFI ;
ALN/Q_length_ratio=0.919 ; DESCRIPTION=Uncharacterized
protein OS=Thermus filiformis GN=THFILI_CONTIG289g02047
PE=4 SV=1 ; EVALUE=4e-80 ; Q/S_length_ratio=0.952"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|F8CGD9|F8CGD9_MYXFH ;
ALN/Q_length_ratio=0.941 ; DESCRIPTION=tRNA pseudouridine
synthase D OS=Myxococcus fulvus (strain ATCC BAA-855 /
HW-1) GN=truD PE=3 SV=1 ; EVALUE=4e-80 ;
Q/S_length_ratio=1.038"
/note="BLAST_uniprot:hit_8 ; ACCESSION=A7HGV2 ;
ALN/Q_length_ratio=0.972 ; DESCRIPTION=tRNA pseudouridine
synthase D OS=Anaeromyxobacter sp. (strain Fw109-5)
GN=truD PE=3 SV=1 ; EVALUE=2e-79 ; Q/S_length_ratio=1.023"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|H8MN14|H8MN14_CORCM ;
ALN/Q_length_ratio=0.930 ; DESCRIPTION=tRNA pseudouridine
synthase D OS=Corallococcus coralloides (strain ATCC 25202
/ DSM 2259 / NBRC 100086 / M2) GN=truD PE=3 SV=1 ;
EVALUE=3e-79 ; Q/S_length_ratio=1.050"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|D7BFF0|D7BFF0_MEISD ;
ALN/Q_length_ratio=0.958 ; DESCRIPTION=tRNA pseudouridine
synthase D OS=Meiothermus silvanus (strain ATCC 700542 /
DSM 9946 / VI-R2) GN=truD PE=3 SV=1 ; EVALUE=1e-78 ;
Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|B7A7Z2|B7A7Z2_THEAQ ;
ALN/Q_length_ratio=0.947 ; DESCRIPTION=tRNA pseudouridine
synthase D OS=Thermus aquaticus Y51MC23 GN=truD PE=3 SV=1
; EVALUE=3e-78 ; Q/S_length_ratio=1.026"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|E3G0E1|E3G0E1_STIAD ;
ALN/Q_length_ratio=0.930 ; DESCRIPTION=tRNA pseudouridine
synthase D OS=Stigmatella aurantiaca (strain DW4/3-1)
GN=truD PE=3 SV=1 ; EVALUE=6e-78 ; Q/S_length_ratio=1.056"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|E4U8F9|E4U8F9_OCEP5 ;
ALN/Q_length_ratio=0.964 ; DESCRIPTION=tRNA pseudouridine
synthase D OS=Oceanithermus profundus (strain DSM 14977 /
NBRC 100410 / VKM B-2274 / 506) GN=truD PE=3 SV=1 ;
EVALUE=1e-76 ; Q/S_length_ratio=0.997"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|Q1J0T8|Q1J0T8_DEIGD ;
ALN/Q_length_ratio=0.944 ; DESCRIPTION=tRNA pseudouridine
synthase D OS=Deinococcus geothermalis (strain DSM 11300)
GN=truD PE=3 SV=1 ; EVALUE=2e-76 ; Q/S_length_ratio=0.994"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|U2TSJ9|U2TSJ9_9DELT ;
ALN/Q_length_ratio=0.941 ; DESCRIPTION=tRNA pseudouridine
synthase D OS=Myxococcus sp. (contaminant ex DSM 436)
GN=truD PE=3 SV=1 ; EVALUE=2e-76 ; Q/S_length_ratio=1.038"
/note="Pfam_scan:hit_1 (1..337); Pfam:PF01142.13:TruD;
Pfam_type:Family;HMM_aln_Length:371; HMM_Length:378;
EVALUE:4.8e-89; BITSCORE: 298.6"
/note="GO_domain:GO:0003723"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0016853"
/note="Enzyme_Code:EC:5.4.99.12"
BEGIN
1 MQHPAMNPPL FTAELPGTGG RIRTHDEDFE VEEVPSYEPC GTGEHLYLWI EKKGVAPEFF
61 AQTIARRLGT HPGNVGTAGL KDRHAVTRQW VSVPKECEPR ISKIDDEGVR VLKTGLHSNK
121 LKPGHLRGNR FRILIREADR TAPVDTILDR IRTQGMPNYY GPQRFGRDGG TVDLGLQCLA
181 GKAPRRIRPF LFRFALSSVQ SLLFNDYLAR RMKDGLFRTV LDGDVMTKWP FGGMFVAKDV
241 PAEQARFDAR ETVTAGPMFG KKTFPAEGIA AEREAVVLHD NGLSIASFGG FGKLVLGTRR
301 QNLVYLDDLV SAWEPDGLRL SFTLPAGSYA TVLLAEVMKT SISEDDAAPD EDGEGEQ
//