LOCUS VTS00334.1 357 aa PRT BCT 03-FEB-2020 DEFINITION Gemmata massiliana trna pseudouridine synthase d : tRNA pseudouridine synthase D OS=Planctomyces maris DSM 8797 GN=truD PE=3 SV=1: TruD protein. ACCESSION LR593886-7373 PROTEIN_ID VTS00334.1 SOURCE Gemmata massiliana ORGANISM Gemmata massiliana Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae; Gemmata. REFERENCE 1 AUTHORS CONSRTM Science for Life Laboratories JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution, Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden FEATURES Qualifiers source /organism="Gemmata massiliana" /chromosome="1" /isolate="Soil9" /mol_type="genomic DNA" /isolation_source="soil" /db_xref="taxon:1210884" protein /locus_tag="SOIL9_82190" /note="BLAST_uniprot:hit_1 ; ACCESSION=tr|A6C2P7|A6C2P7_9PLAN ; ALN/Q_length_ratio=0.952 ; DESCRIPTION=tRNA pseudouridine synthase D OS=Planctomyces maris DSM 8797 GN=truD PE=3 SV=1 ; EVALUE=9e-89 ; Q/S_length_ratio=1.003" /note="BLAST_uniprot:hit_2 ; ACCESSION=tr|D5SNU2|D5SNU2_PLAL2 ; ALN/Q_length_ratio=1.017 ; DESCRIPTION=tRNA pseudouridine synthase D OS=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=truD PE=3 SV=1 ; EVALUE=5e-86 ; Q/S_length_ratio=0.920" /note="BLAST_uniprot:hit_3 ; ACCESSION=tr|G8N9A9|G8N9A9_9DEIN ; ALN/Q_length_ratio=0.958 ; DESCRIPTION=tRNA pseudouridine synthase D OS=Thermus sp. CCB_US3_UF1 GN=truD PE=3 SV=1 ; EVALUE=1e-80 ; Q/S_length_ratio=1.014" /note="BLAST_uniprot:hit_4 ; ACCESSION=tr|K7RK13|K7RK13_THEOS ; ALN/Q_length_ratio=0.924 ; DESCRIPTION=tRNA pseudouridine synthase D OS=Thermus oshimai JL-2 GN=truD PE=3 SV=1 ; EVALUE=2e-80 ; Q/S_length_ratio=1.014" /note="BLAST_uniprot:hit_5 ; ACCESSION=tr|Q1D1X5|Q1D1X5_MYXXD ; ALN/Q_length_ratio=0.941 ; DESCRIPTION=tRNA pseudouridine synthase D OS=Myxococcus xanthus (strain DK 1622) GN=truD PE=3 SV=1 ; EVALUE=2e-80 ; Q/S_length_ratio=1.038" /note="BLAST_uniprot:hit_7 ; ACCESSION=tr|A0A0A2WQX0|A0A0A2WQX0_THEFI ; ALN/Q_length_ratio=0.919 ; DESCRIPTION=Uncharacterized protein OS=Thermus filiformis GN=THFILI_CONTIG289g02047 PE=4 SV=1 ; EVALUE=4e-80 ; Q/S_length_ratio=0.952" /note="BLAST_uniprot:hit_6 ; ACCESSION=tr|F8CGD9|F8CGD9_MYXFH ; ALN/Q_length_ratio=0.941 ; DESCRIPTION=tRNA pseudouridine synthase D OS=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) GN=truD PE=3 SV=1 ; EVALUE=4e-80 ; Q/S_length_ratio=1.038" /note="BLAST_uniprot:hit_8 ; ACCESSION=A7HGV2 ; ALN/Q_length_ratio=0.972 ; DESCRIPTION=tRNA pseudouridine synthase D OS=Anaeromyxobacter sp. (strain Fw109-5) GN=truD PE=3 SV=1 ; EVALUE=2e-79 ; Q/S_length_ratio=1.023" /note="BLAST_uniprot:hit_9 ; ACCESSION=tr|H8MN14|H8MN14_CORCM ; ALN/Q_length_ratio=0.930 ; DESCRIPTION=tRNA pseudouridine synthase D OS=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) GN=truD PE=3 SV=1 ; EVALUE=3e-79 ; Q/S_length_ratio=1.050" /note="BLAST_uniprot:hit_10 ; ACCESSION=tr|D7BFF0|D7BFF0_MEISD ; ALN/Q_length_ratio=0.958 ; DESCRIPTION=tRNA pseudouridine synthase D OS=Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) GN=truD PE=3 SV=1 ; EVALUE=1e-78 ; Q/S_length_ratio=1.000" /note="BLAST_uniprot:hit_11 ; ACCESSION=tr|B7A7Z2|B7A7Z2_THEAQ ; ALN/Q_length_ratio=0.947 ; DESCRIPTION=tRNA pseudouridine synthase D OS=Thermus aquaticus Y51MC23 GN=truD PE=3 SV=1 ; EVALUE=3e-78 ; Q/S_length_ratio=1.026" /note="BLAST_uniprot:hit_12 ; ACCESSION=tr|E3G0E1|E3G0E1_STIAD ; ALN/Q_length_ratio=0.930 ; DESCRIPTION=tRNA pseudouridine synthase D OS=Stigmatella aurantiaca (strain DW4/3-1) GN=truD PE=3 SV=1 ; EVALUE=6e-78 ; Q/S_length_ratio=1.056" /note="BLAST_uniprot:hit_13 ; ACCESSION=tr|E4U8F9|E4U8F9_OCEP5 ; ALN/Q_length_ratio=0.964 ; DESCRIPTION=tRNA pseudouridine synthase D OS=Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 / 506) GN=truD PE=3 SV=1 ; EVALUE=1e-76 ; Q/S_length_ratio=0.997" /note="BLAST_uniprot:hit_15 ; ACCESSION=tr|Q1J0T8|Q1J0T8_DEIGD ; ALN/Q_length_ratio=0.944 ; DESCRIPTION=tRNA pseudouridine synthase D OS=Deinococcus geothermalis (strain DSM 11300) GN=truD PE=3 SV=1 ; EVALUE=2e-76 ; Q/S_length_ratio=0.994" /note="BLAST_uniprot:hit_14 ; ACCESSION=tr|U2TSJ9|U2TSJ9_9DELT ; ALN/Q_length_ratio=0.941 ; DESCRIPTION=tRNA pseudouridine synthase D OS=Myxococcus sp. (contaminant ex DSM 436) GN=truD PE=3 SV=1 ; EVALUE=2e-76 ; Q/S_length_ratio=1.038" /note="Pfam_scan:hit_1 (1..337); Pfam:PF01142.13:TruD; Pfam_type:Family;HMM_aln_Length:371; HMM_Length:378; EVALUE:4.8e-89; BITSCORE: 298.6" /note="GO_domain:GO:0003723" /note="GO_domain:GO:0034641" /note="GO_domain:GO:0016853" /note="Enzyme_Code:EC:5.4.99.12" BEGIN 1 MQHPAMNPPL FTAELPGTGG RIRTHDEDFE VEEVPSYEPC GTGEHLYLWI EKKGVAPEFF 61 AQTIARRLGT HPGNVGTAGL KDRHAVTRQW VSVPKECEPR ISKIDDEGVR VLKTGLHSNK 121 LKPGHLRGNR FRILIREADR TAPVDTILDR IRTQGMPNYY GPQRFGRDGG TVDLGLQCLA 181 GKAPRRIRPF LFRFALSSVQ SLLFNDYLAR RMKDGLFRTV LDGDVMTKWP FGGMFVAKDV 241 PAEQARFDAR ETVTAGPMFG KKTFPAEGIA AEREAVVLHD NGLSIASFGG FGKLVLGTRR 301 QNLVYLDDLV SAWEPDGLRL SFTLPAGSYA TVLLAEVMKT SISEDDAAPD EDGEGEQ //