LOCUS VTS00050.1 478 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana fis family transcriptional regulator
: Sigma-54 factor interaction domain-containing protein
OS=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776
/ IFAM 1008 / 290) GN=Plim_0139 PE=4 SV=1: Sigma54_activat:
HTH_8 protein.
ACCESSION LR593886-7278
PROTEIN_ID VTS00050.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_83140"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|D5SN64|D5SN64_PLAL2 ;
ALN/Q_length_ratio=0.692 ; DESCRIPTION=Sigma-54 factor
interaction domain-containing protein OS=Planctomyces
limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 /
290) GN=Plim_0139 PE=4 SV=1 ; EVALUE=5e-92 ;
Q/S_length_ratio=0.935"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|A6CE52|A6CE52_9PLAN ;
ALN/Q_length_ratio=0.753 ; DESCRIPTION=Acetoacetate
metabolism regulatory protein ATOC OS=Planctomyces maris
DSM 8797 GN=PM8797T_00564 PE=4 SV=1 ; EVALUE=1e-79 ;
Q/S_length_ratio=1.004"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|D2R8F7|D2R8F7_PIRSD ;
ALN/Q_length_ratio=0.519 ; DESCRIPTION=Sigma54 specific
transcriptional regulator, Fis family OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_1091
PE=4 SV=1 ; EVALUE=2e-77 ; Q/S_length_ratio=0.892"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|F2NHP9|F2NHP9_DESAR ;
ALN/Q_length_ratio=0.640 ; DESCRIPTION=Sigma54 specific
transcriptional regulator, Fis family OS=Desulfobacca
acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2)
GN=Desac_1380 PE=4 SV=1 ; EVALUE=4e-75 ;
Q/S_length_ratio=1.498"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|I0GJJ1|I0GJJ1_CALEA ;
ALN/Q_length_ratio=0.661 ; DESCRIPTION=NtrC family
two-component system response regulator OS=Caldisericum
exile (strain DSM 21853 / NBRC 104410 / AZM16c01)
GN=CSE_08020 PE=4 SV=1 ; EVALUE=3e-74 ;
Q/S_length_ratio=1.017"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|Q1JWI4|Q1JWI4_DESAC ;
ALN/Q_length_ratio=0.636 ; DESCRIPTION=Sigma54 specific
transcriptional regulator, Fis family OS=Desulfuromonas
acetoxidans DSM 684 GN=Dace_0413 PE=4 SV=1 ; EVALUE=7e-72
; Q/S_length_ratio=1.044"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|S9PQW0|S9PQW0_9DELT ;
ALN/Q_length_ratio=0.665 ; DESCRIPTION=Response regulator
of zinc sigma-54-dependent two-component system
OS=Cystobacter fuscus DSM 2262 GN=D187_000335 PE=4 SV=1 ;
EVALUE=1e-71 ; Q/S_length_ratio=1.019"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|C0QIQ0|C0QIQ0_DESAH ;
ALN/Q_length_ratio=0.594 ; DESCRIPTION=Sigma-54 dependent
DNA-binding response regulator (NtrC-type regulator)
OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM
3382 / HRM2) GN=HRM2_05760 PE=4 SV=1 ; EVALUE=3e-71 ;
Q/S_length_ratio=1.060"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|B3E6R3|B3E6R3_GEOLS ;
ALN/Q_length_ratio=0.638 ; DESCRIPTION=Two component,
sigma54 specific, transcriptional regulator, Fis family
OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 /
SZ) GN=Glov_1166 PE=4 SV=1 ; EVALUE=3e-71 ;
Q/S_length_ratio=1.069"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|H1XSW1|H1XSW1_9BACT ;
ALN/Q_length_ratio=0.709 ; DESCRIPTION=Two component,
sigma54 specific, transcriptional regulator, Fis family
OS=Caldithrix abyssi DSM 13497 GN=Calab_0698 PE=4 SV=1 ;
EVALUE=5e-71 ; Q/S_length_ratio=1.074"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|D6Z075|D6Z075_DESAT ;
ALN/Q_length_ratio=0.644 ; DESCRIPTION=Two component,
sigma54 specific, transcriptional regulator, Fis family
OS=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM
U267 / AHT2) GN=DaAHT2_2443 PE=4 SV=1 ; EVALUE=7e-71 ;
Q/S_length_ratio=1.048"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|Q021K3|Q021K3_SOLUE ;
ALN/Q_length_ratio=0.657 ; DESCRIPTION=Two component,
sigma54 specific, transcriptional regulator, Fis family
OS=Solibacter usitatus (strain Ellin6076) GN=Acid_3413
PE=4 SV=1 ; EVALUE=1e-70 ; Q/S_length_ratio=1.055"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|F0JDN5|F0JDN5_DESDE ;
ALN/Q_length_ratio=0.935 ; DESCRIPTION=Two component,
sigma54 specific, transcriptional regulator, Fis family
OS=Desulfovibrio desulfuricans ND132 GN=DND132_1358 PE=4
SV=1 ; EVALUE=2e-70 ; Q/S_length_ratio=1.062"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|E3FV28|E3FV28_STIAD ;
ALN/Q_length_ratio=0.661 ; DESCRIPTION=Sigma-54 dependent
DNA-binding response regulator SasR OS=Stigmatella
aurantiaca (strain DW4/3-1) GN=sasR PE=4 SV=1 ;
EVALUE=4e-70 ; Q/S_length_ratio=1.019"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|F6CNR7|F6CNR7_DESK7 ;
ALN/Q_length_ratio=0.646 ; DESCRIPTION=Two component,
sigma54 specific, transcriptional regulator, Fis family
OS=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM
B-1805 / 17) GN=Desku_2572 PE=4 SV=1 ; EVALUE=7e-70 ;
Q/S_length_ratio=1.062"
/note="Pfam_scan:hit_1 (145..312);
Pfam:PF00158.21:Sigma54_activat;
Pfam_type:Domain;HMM_aln_Length:165; HMM_Length:168;
EVALUE:6.7e-55; BITSCORE: 185.1"
/note="Pfam_scan:hit_2 (414..455); Pfam:PF02954.14:HTH_8;
Pfam_type:Domain;HMM_aln_Length:40; HMM_Length:42;
EVALUE:2.3e-12; BITSCORE: 46.2"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0043167"
/note="GO_domain:GO:0008134"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MGSSRRLVIV AQDQRLASVV QSHLHRAIQV TAPIVRYEDV PNLLTPETDG DLLLLASDPA
61 DASAVETVVR ETKVQHLPAG LSVLETDVVR ASGKLDPLNP YIAERFVWPH HPRELTAWAH
121 RALAPGTPFA DPATESVAET IRRRLINHTP SLTAMVEQLC IASAHDVTVL IEGETGTGKT
181 FLAKLVHDCS ERRANRFLVV SCGTLSGNLI ASEFFGHAKG AFTSADAVKV GKFAAAGEGT
241 ILLDEIDTLG LEHQANLLRV IETGEFEPVG SNETQLCRAR IVAATNWNLA DAVERGTFRR
301 DLYYRLHVLS FQLPALRYRP EDIGPLVRGM VAKYGTKYSK RLFSVCPEAL RALEAFPWPG
361 NIRQLENVVQ QAVLTSAGNE LKVHHLSPQV FSRTDAPTVM MPLPTGFDGT LKQTREATER
421 ANILRALEKA NQSRTRAAQM LGVSRVTLYK KMRAYNLLKK DAPVTYPFDE FNQRAGNA
//