LOCUS VTS00050.1 478 aa PRT BCT 03-FEB-2020 DEFINITION Gemmata massiliana fis family transcriptional regulator : Sigma-54 factor interaction domain-containing protein OS=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=Plim_0139 PE=4 SV=1: Sigma54_activat: HTH_8 protein. ACCESSION LR593886-7278 PROTEIN_ID VTS00050.1 SOURCE Gemmata massiliana ORGANISM Gemmata massiliana Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae; Gemmata. REFERENCE 1 AUTHORS CONSRTM Science for Life Laboratories JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution, Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden FEATURES Qualifiers source /organism="Gemmata massiliana" /chromosome="1" /isolate="Soil9" /mol_type="genomic DNA" /isolation_source="soil" /db_xref="taxon:1210884" protein /locus_tag="SOIL9_83140" /note="BLAST_uniprot:hit_1 ; ACCESSION=tr|D5SN64|D5SN64_PLAL2 ; ALN/Q_length_ratio=0.692 ; DESCRIPTION=Sigma-54 factor interaction domain-containing protein OS=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=Plim_0139 PE=4 SV=1 ; EVALUE=5e-92 ; Q/S_length_ratio=0.935" /note="BLAST_uniprot:hit_2 ; ACCESSION=tr|A6CE52|A6CE52_9PLAN ; ALN/Q_length_ratio=0.753 ; DESCRIPTION=Acetoacetate metabolism regulatory protein ATOC OS=Planctomyces maris DSM 8797 GN=PM8797T_00564 PE=4 SV=1 ; EVALUE=1e-79 ; Q/S_length_ratio=1.004" /note="BLAST_uniprot:hit_3 ; ACCESSION=tr|D2R8F7|D2R8F7_PIRSD ; ALN/Q_length_ratio=0.519 ; DESCRIPTION=Sigma54 specific transcriptional regulator, Fis family OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_1091 PE=4 SV=1 ; EVALUE=2e-77 ; Q/S_length_ratio=0.892" /note="BLAST_uniprot:hit_4 ; ACCESSION=tr|F2NHP9|F2NHP9_DESAR ; ALN/Q_length_ratio=0.640 ; DESCRIPTION=Sigma54 specific transcriptional regulator, Fis family OS=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) GN=Desac_1380 PE=4 SV=1 ; EVALUE=4e-75 ; Q/S_length_ratio=1.498" /note="BLAST_uniprot:hit_5 ; ACCESSION=tr|I0GJJ1|I0GJJ1_CALEA ; ALN/Q_length_ratio=0.661 ; DESCRIPTION=NtrC family two-component system response regulator OS=Caldisericum exile (strain DSM 21853 / NBRC 104410 / AZM16c01) GN=CSE_08020 PE=4 SV=1 ; EVALUE=3e-74 ; Q/S_length_ratio=1.017" /note="BLAST_uniprot:hit_6 ; ACCESSION=tr|Q1JWI4|Q1JWI4_DESAC ; ALN/Q_length_ratio=0.636 ; DESCRIPTION=Sigma54 specific transcriptional regulator, Fis family OS=Desulfuromonas acetoxidans DSM 684 GN=Dace_0413 PE=4 SV=1 ; EVALUE=7e-72 ; Q/S_length_ratio=1.044" /note="BLAST_uniprot:hit_7 ; ACCESSION=tr|S9PQW0|S9PQW0_9DELT ; ALN/Q_length_ratio=0.665 ; DESCRIPTION=Response regulator of zinc sigma-54-dependent two-component system OS=Cystobacter fuscus DSM 2262 GN=D187_000335 PE=4 SV=1 ; EVALUE=1e-71 ; Q/S_length_ratio=1.019" /note="BLAST_uniprot:hit_8 ; ACCESSION=tr|C0QIQ0|C0QIQ0_DESAH ; ALN/Q_length_ratio=0.594 ; DESCRIPTION=Sigma-54 dependent DNA-binding response regulator (NtrC-type regulator) OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=HRM2_05760 PE=4 SV=1 ; EVALUE=3e-71 ; Q/S_length_ratio=1.060" /note="BLAST_uniprot:hit_9 ; ACCESSION=tr|B3E6R3|B3E6R3_GEOLS ; ALN/Q_length_ratio=0.638 ; DESCRIPTION=Two component, sigma54 specific, transcriptional regulator, Fis family OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=Glov_1166 PE=4 SV=1 ; EVALUE=3e-71 ; Q/S_length_ratio=1.069" /note="BLAST_uniprot:hit_10 ; ACCESSION=tr|H1XSW1|H1XSW1_9BACT ; ALN/Q_length_ratio=0.709 ; DESCRIPTION=Two component, sigma54 specific, transcriptional regulator, Fis family OS=Caldithrix abyssi DSM 13497 GN=Calab_0698 PE=4 SV=1 ; EVALUE=5e-71 ; Q/S_length_ratio=1.074" /note="BLAST_uniprot:hit_11 ; ACCESSION=tr|D6Z075|D6Z075_DESAT ; ALN/Q_length_ratio=0.644 ; DESCRIPTION=Two component, sigma54 specific, transcriptional regulator, Fis family OS=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) GN=DaAHT2_2443 PE=4 SV=1 ; EVALUE=7e-71 ; Q/S_length_ratio=1.048" /note="BLAST_uniprot:hit_12 ; ACCESSION=tr|Q021K3|Q021K3_SOLUE ; ALN/Q_length_ratio=0.657 ; DESCRIPTION=Two component, sigma54 specific, transcriptional regulator, Fis family OS=Solibacter usitatus (strain Ellin6076) GN=Acid_3413 PE=4 SV=1 ; EVALUE=1e-70 ; Q/S_length_ratio=1.055" /note="BLAST_uniprot:hit_13 ; ACCESSION=tr|F0JDN5|F0JDN5_DESDE ; ALN/Q_length_ratio=0.935 ; DESCRIPTION=Two component, sigma54 specific, transcriptional regulator, Fis family OS=Desulfovibrio desulfuricans ND132 GN=DND132_1358 PE=4 SV=1 ; EVALUE=2e-70 ; Q/S_length_ratio=1.062" /note="BLAST_uniprot:hit_14 ; ACCESSION=tr|E3FV28|E3FV28_STIAD ; ALN/Q_length_ratio=0.661 ; DESCRIPTION=Sigma-54 dependent DNA-binding response regulator SasR OS=Stigmatella aurantiaca (strain DW4/3-1) GN=sasR PE=4 SV=1 ; EVALUE=4e-70 ; Q/S_length_ratio=1.019" /note="BLAST_uniprot:hit_15 ; ACCESSION=tr|F6CNR7|F6CNR7_DESK7 ; ALN/Q_length_ratio=0.646 ; DESCRIPTION=Two component, sigma54 specific, transcriptional regulator, Fis family OS=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) GN=Desku_2572 PE=4 SV=1 ; EVALUE=7e-70 ; Q/S_length_ratio=1.062" /note="Pfam_scan:hit_1 (145..312); Pfam:PF00158.21:Sigma54_activat; Pfam_type:Domain;HMM_aln_Length:165; HMM_Length:168; EVALUE:6.7e-55; BITSCORE: 185.1" /note="Pfam_scan:hit_2 (414..455); Pfam:PF02954.14:HTH_8; Pfam_type:Domain;HMM_aln_Length:40; HMM_Length:42; EVALUE:2.3e-12; BITSCORE: 46.2" /note="GO_domain:GO:0003677" /note="GO_domain:GO:0043167" /note="GO_domain:GO:0008134" /note="GO_domain:GO:0034641" /note="GO_domain:GO:0009058" /note="GO_domain:GO:0043234" /note="GO_domain:GO:0005622" BEGIN 1 MGSSRRLVIV AQDQRLASVV QSHLHRAIQV TAPIVRYEDV PNLLTPETDG DLLLLASDPA 61 DASAVETVVR ETKVQHLPAG LSVLETDVVR ASGKLDPLNP YIAERFVWPH HPRELTAWAH 121 RALAPGTPFA DPATESVAET IRRRLINHTP SLTAMVEQLC IASAHDVTVL IEGETGTGKT 181 FLAKLVHDCS ERRANRFLVV SCGTLSGNLI ASEFFGHAKG AFTSADAVKV GKFAAAGEGT 241 ILLDEIDTLG LEHQANLLRV IETGEFEPVG SNETQLCRAR IVAATNWNLA DAVERGTFRR 301 DLYYRLHVLS FQLPALRYRP EDIGPLVRGM VAKYGTKYSK RLFSVCPEAL RALEAFPWPG 361 NIRQLENVVQ QAVLTSAGNE LKVHHLSPQV FSRTDAPTVM MPLPTGFDGT LKQTREATER 421 ANILRALEKA NQSRTRAAQM LGVSRVTLYK KMRAYNLLKK DAPVTYPFDE FNQRAGNA //