LOCUS VTS00005.1 523 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase sigma70 : RNA polymerase
sigma factor SigA OS=Pirellula staleyi (strain ATCC 27377
/ DSM 6068 / ICPB 4128) GN=sigA PE=3 SV=1: Sigma70_r1_2:
Sigma70_r2: Sigma70_r3: Sigma70_r4 protein.
ACCESSION LR593886-7263
PROTEIN_ID VTS00005.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_83290"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|D2R6R0|D2R6R0_PIRSD ;
ALN/Q_length_ratio=0.862 ; DESCRIPTION=RNA polymerase
sigma factor SigA OS=Pirellula staleyi (strain ATCC 27377
/ DSM 6068 / ICPB 4128) GN=sigA PE=3 SV=1 ; EVALUE=1e-105
; Q/S_length_ratio=0.961"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DAT7|L0DAT7_SINAD ;
ALN/Q_length_ratio=0.964 ; DESCRIPTION=RNA polymerase
sigma factor SigA OS=Singulisphaera acidiphila (strain
ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=sigA
PE=3 SV=1 ; EVALUE=1e-104 ; Q/S_length_ratio=0.941"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|E8R2V4|E8R2V4_ISOPI ;
ALN/Q_length_ratio=0.876 ; DESCRIPTION=RNA polymerase
sigma factor SigA OS=Isosphaera pallida (strain ATCC 43644
/ DSM 9630 / IS1B) GN=sigA PE=3 SV=1 ; EVALUE=1e-104 ;
Q/S_length_ratio=0.883"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|A6C4Z7|A6C4Z7_9PLAN ;
ALN/Q_length_ratio=0.912 ; DESCRIPTION=RNA polymerase
sigma factor SigA OS=Planctomyces maris DSM 8797 GN=sigA
PE=3 SV=1 ; EVALUE=1e-102 ; Q/S_length_ratio=0.932"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|A3ZZZ4|A3ZZZ4_9PLAN ;
ALN/Q_length_ratio=0.939 ; DESCRIPTION=RNA polymerase
sigma factor SigA OS=Blastopirellula marina DSM 3645
GN=sigA PE=3 SV=1 ; EVALUE=1e-102 ;
Q/S_length_ratio=0.922"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|M2AWI6|M2AWI6_9PLAN ;
ALN/Q_length_ratio=0.916 ; DESCRIPTION=RNA polymerase
sigma factor SigA OS=Rhodopirellula europaea 6C GN=sigA
PE=3 SV=1 ; EVALUE=1e-99 ; Q/S_length_ratio=0.922"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|M5SSX9|M5SSX9_9PLAN ;
ALN/Q_length_ratio=0.916 ; DESCRIPTION=RNA polymerase
sigma factor SigA OS=Rhodopirellula europaea SH398 GN=sigA
PE=3 SV=1 ; EVALUE=1e-99 ; Q/S_length_ratio=0.922"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|D2QZ41|D2QZ41_PIRSD ;
ALN/Q_length_ratio=0.950 ; DESCRIPTION=RNA polymerase
sigma factor SigA OS=Pirellula staleyi (strain ATCC 27377
/ DSM 6068 / ICPB 4128) GN=sigA PE=3 SV=1 ; EVALUE=3e-99 ;
Q/S_length_ratio=0.998"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L7CCA8|L7CCA8_RHOBT ;
ALN/Q_length_ratio=0.887 ; DESCRIPTION=RNA polymerase
sigma factor SigA OS=Rhodopirellula baltica SWK14 GN=sigA
PE=3 SV=1 ; EVALUE=7e-99 ; Q/S_length_ratio=0.922"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|Q7UQG1|Q7UQG1_RHOBA ;
ALN/Q_length_ratio=0.887 ; DESCRIPTION=RNA polymerase
sigma factor SigA OS=Rhodopirellula baltica (strain SH1)
GN=sigA PE=3 SV=1 ; EVALUE=7e-99 ; Q/S_length_ratio=0.922"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|K5DET9|K5DET9_RHOBT ;
ALN/Q_length_ratio=0.887 ; DESCRIPTION=RNA polymerase
sigma factor SigA OS=Rhodopirellula baltica SH28 GN=sigA
PE=3 SV=1 ; EVALUE=7e-99 ; Q/S_length_ratio=0.922"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|F2AVR1|F2AVR1_RHOBT ;
ALN/Q_length_ratio=0.887 ; DESCRIPTION=RNA polymerase
sigma factor SigA OS=Rhodopirellula baltica WH47 GN=sigA
PE=3 SV=1 ; EVALUE=1e-98 ; Q/S_length_ratio=0.922"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|D5SND9|D5SND9_PLAL2 ;
ALN/Q_length_ratio=0.987 ; DESCRIPTION=RNA polymerase
sigma factor SigA OS=Planctomyces limnophilus (strain ATCC
43296 / DSM 3776 / IFAM 1008 / 290) GN=sigA PE=3 SV=1 ;
EVALUE=6e-98 ; Q/S_length_ratio=0.951"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|M5TGM0|M5TGM0_9PLAN ;
ALN/Q_length_ratio=0.920 ; DESCRIPTION=RNA polymerase
sigma factor SigA OS=Rhodopirellula sp. SWK7 GN=sigA PE=3
SV=1 ; EVALUE=8e-98 ; Q/S_length_ratio=0.873"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|M5RK64|M5RK64_9PLAN ;
ALN/Q_length_ratio=0.941 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula maiorica SM1 GN=RMSM_03370
PE=3 SV=1 ; EVALUE=4e-97 ; Q/S_length_ratio=1.006"
/note="Pfam_scan:hit_1 (71..106);
Pfam:PF00140.15:Sigma70_r1_2;
Pfam_type:Family;HMM_aln_Length:29; HMM_Length:37;
EVALUE:5.1e-10; BITSCORE: 38.8"
/note="Pfam_scan:hit_2 (287..357);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:70; HMM_Length:71;
EVALUE:3e-18; BITSCORE: 65.2"
/note="Pfam_scan:hit_3 (366..443);
Pfam:PF04539.11:Sigma70_r3;
Pfam_type:Family;HMM_aln_Length:75; HMM_Length:78;
EVALUE:1.2e-15; BITSCORE: 57.0"
/note="Pfam_scan:hit_4 (455..508);
Pfam:PF04545.11:Sigma70_r4;
Pfam_type:Domain;HMM_aln_Length:49; HMM_Length:50;
EVALUE:1.8e-19; BITSCORE: 68.7"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MNRMTHNDEL NDQPVNELPH DERVPQDERE DSDDDLADDS EESDEDTALE PEEASGDSEA
61 ASEDEYAGGP DDALGLYLRQ MGSIPLLNRE RELALAKRLE HHRNRFRSAA LLCPRLLVRV
121 LEKFEQIAAG QTPIDPNIDA YSSADLRLTR AQILARLGTD LPTLRVLLGQ DSVVFAAGVR
181 DEFRGDHSAW QRDRFHRLAK CRRLVSELSP RTELLERWTD ELNDLADELK HLAIAQSEVG
241 CPADRIKQTK LLRDAECGAS MTTDELAALI RVLRKRRLAY QAVRKELAEA NLRLVVSIAK
301 NYRNRGLPFS DLIQEGNRGL MRAVDKYEWR LEFKFGTYAT WWIRQGITRA LHDNARTVRV
361 PCHQISLLSR MEKTRGELTA ATGREPTTEE LAAALDIKPE DARSLRIVGR HPVSLNDAVG
421 GEGERALEDF LSDGQIPNPG EHVDANLLKE RIGEVLKSLA PREREVIELR FGLKDGTPRT
481 LDEVAKQYGI TRERIRQIEA RGLLKLRQPT RSCRLEEFAD ENE
//